miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 46667 0.78 0.185467
Target:  5'- uUCCGCGCGUuggccgcgcGCUccacgGCGGCCGCCACGg -3'
miRNA:   3'- uAGGCGCGCA---------CGA-----UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 96168 0.78 0.19359
Target:  5'- -gCCGCGCGUGCccauguuugcgacgUACGACCACgCGCAc -3'
miRNA:   3'- uaGGCGCGCACG--------------AUGCUGGUG-GUGUa -5'
23761 3' -57.9 NC_005261.1 + 76915 0.77 0.220938
Target:  5'- -gCUGUGCGUGCUG-GGCCGCCGCGUc -3'
miRNA:   3'- uaGGCGCGCACGAUgCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 107301 0.77 0.220938
Target:  5'- cUCCGcCGCG-GCcACGGCCGCCGCGUg -3'
miRNA:   3'- uAGGC-GCGCaCGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 103417 0.76 0.249692
Target:  5'- cUCCGCGCGgGCcGCGGCCACgCGCGc -3'
miRNA:   3'- uAGGCGCGCaCGaUGCUGGUG-GUGUa -5'
23761 3' -57.9 NC_005261.1 + 33371 0.76 0.249692
Target:  5'- -gCCGCGCcggGCUGCgGGCCGCCGCAg -3'
miRNA:   3'- uaGGCGCGca-CGAUG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 44019 0.75 0.295045
Target:  5'- uUCgGCGCG-GCggGCGGCCGCCGCGc -3'
miRNA:   3'- uAGgCGCGCaCGa-UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 89416 0.75 0.295045
Target:  5'- cUCgGCGCGUGC-GCGGCCGCCGgGc -3'
miRNA:   3'- uAGgCGCGCACGaUGCUGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 52568 0.74 0.346561
Target:  5'- cUCgCGCGCGaGCUcgccguCGACCACCACAg -3'
miRNA:   3'- uAG-GCGCGCaCGAu-----GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 30177 0.73 0.387128
Target:  5'- -gCCGCGC-UGCgcgccgagGCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCGcACGa-------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 102986 0.73 0.387128
Target:  5'- -gCCGCGCGcGacacgGCGGCCGCCACGc -3'
miRNA:   3'- uaGGCGCGCaCga---UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 125717 0.73 0.395608
Target:  5'- -gCCGcCGCGggcucgGCUGgGGCCGCCGCAa -3'
miRNA:   3'- uaGGC-GCGCa-----CGAUgCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 60704 0.73 0.395608
Target:  5'- -gCCGCGCGUgGCggcgcacgGCGguGCCACCGCGUg -3'
miRNA:   3'- uaGGCGCGCA-CGa-------UGC--UGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 101149 0.73 0.395608
Target:  5'- -gCCGCGCG-GCgGCGcGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCaCGaUGC-UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 47802 0.72 0.421754
Target:  5'- gAUCCGCGCGcGCaGCG-CCACCAgGg -3'
miRNA:   3'- -UAGGCGCGCaCGaUGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 113041 0.72 0.45818
Target:  5'- -gCCGCGCGcgGCgugGCGcGCCACCGCu- -3'
miRNA:   3'- uaGGCGCGCa-CGa--UGC-UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 37542 0.71 0.467547
Target:  5'- gGUCCGCGCGccGCUcccGCcGCCGCCACc- -3'
miRNA:   3'- -UAGGCGCGCa-CGA---UGcUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 62302 0.71 0.486571
Target:  5'- -gCCGCGCGggcGCgcgGCGGCC-CCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGa--UGCUGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 79819 0.71 0.49622
Target:  5'- cAUgCGCGCGgcgGCgcgGCGGCCAgCGCAg -3'
miRNA:   3'- -UAgGCGCGCa--CGa--UGCUGGUgGUGUa -5'
23761 3' -57.9 NC_005261.1 + 103955 0.71 0.505954
Target:  5'- -gCgGCGCGaccGCgGCGGCCGCCACAc -3'
miRNA:   3'- uaGgCGCGCa--CGaUGCUGGUGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.