miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 103955 0.71 0.505954
Target:  5'- -gCgGCGCGaccGCgGCGGCCGCCACAc -3'
miRNA:   3'- uaGgCGCGCa--CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 64838 0.71 0.505954
Target:  5'- gGUCCGCGCGcUGCaGCG-CCaugACCGCGUc -3'
miRNA:   3'- -UAGGCGCGC-ACGaUGCuGG---UGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 72733 0.7 0.515769
Target:  5'- cGUCCGCGCGg---GCGGCCcgcauggcggGCCGCAUg -3'
miRNA:   3'- -UAGGCGCGCacgaUGCUGG----------UGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 86900 0.7 0.52566
Target:  5'- gGUCCGCGCGcgGCgcggacccGCGuCCACCGCc- -3'
miRNA:   3'- -UAGGCGCGCa-CGa-------UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 105219 0.7 0.535622
Target:  5'- -gCCGCGCGgGCcGCGGCCGCgGCc- -3'
miRNA:   3'- uaGGCGCGCaCGaUGCUGGUGgUGua -5'
23761 3' -57.9 NC_005261.1 + 131261 0.7 0.536622
Target:  5'- gGUCCGCuGCcUGCgugaguacaucgaccACGACCGCCGCAg -3'
miRNA:   3'- -UAGGCG-CGcACGa--------------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 60203 0.7 0.54565
Target:  5'- aGUCCGCGCGcGC-GCucCCGCCGCGg -3'
miRNA:   3'- -UAGGCGCGCaCGaUGcuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 50037 0.7 0.54565
Target:  5'- -gCCGCGCGacggUGCaGCG-CCGCCGCGa -3'
miRNA:   3'- uaGGCGCGC----ACGaUGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 108324 0.7 0.54565
Target:  5'- -gCCGcCGCGUGCUccGCGACCcgcGCCAgGg -3'
miRNA:   3'- uaGGC-GCGCACGA--UGCUGG---UGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 67301 0.7 0.555736
Target:  5'- -gCCGCGCGcGCgccgccguCGGCCGCCGCc- -3'
miRNA:   3'- uaGGCGCGCaCGau------GCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 99719 0.7 0.555736
Target:  5'- gGUCgCGCGCGUgGCcGCGucaggcgcguGCCGCCACAc -3'
miRNA:   3'- -UAG-GCGCGCA-CGaUGC----------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 103354 0.7 0.562829
Target:  5'- cUCCGCGCGccGCUcccccagcucggccGCGcGCCGCCGCGc -3'
miRNA:   3'- uAGGCGCGCa-CGA--------------UGC-UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 51882 0.7 0.565877
Target:  5'- -gCCGCGCGgcaGCaGCGGCgCGCUACAUc -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUG-GUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 107807 0.7 0.565877
Target:  5'- cUCgCGCGCGgcgGCccuaGCGGCCGCCGCc- -3'
miRNA:   3'- uAG-GCGCGCa--CGa---UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 93810 0.69 0.586292
Target:  5'- -gCCGCGCGccGCcGCcACCGCCGCAg -3'
miRNA:   3'- uaGGCGCGCa-CGaUGcUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118572 0.69 0.586292
Target:  5'- -cCCGCGCGcGCggcgGCGcgcgccGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCaCGa---UGC------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 87030 0.69 0.602724
Target:  5'- -cCCGCGCGccaccgcguccagGCUGCGcacacgcagcGCCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa------------CGAUGC----------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 85014 0.69 0.606842
Target:  5'- -gCCGCGgGgucGC-GCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCa--CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 104514 0.69 0.606842
Target:  5'- cUCCGUgGCGgccGCgacgGCGGCCGCCACc- -3'
miRNA:   3'- uAGGCG-CGCa--CGa---UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 45477 0.69 0.606842
Target:  5'- --aCGCGCGUGCUgaacACGGCCAUgUGCAUg -3'
miRNA:   3'- uagGCGCGCACGA----UGCUGGUG-GUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.