Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 104671 | 0.69 | 0.606842 |
Target: 5'- ---gGCGUGUGCUGCGgcagcgccuggGCCACCGCc- -3' miRNA: 3'- uaggCGCGCACGAUGC-----------UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 47617 | 0.69 | 0.61715 |
Target: 5'- -cCUGCGgGggcgGCcGCGGCCGCCGCGc -3' miRNA: 3'- uaGGCGCgCa---CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 50823 | 0.69 | 0.61715 |
Target: 5'- cUCCGCGCG-GCUugG--CGCCGCGa -3' miRNA: 3'- uAGGCGCGCaCGAugCugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 112960 | 0.69 | 0.61715 |
Target: 5'- -gCCGCGC-UGUccacgGCGGCCGCCACc- -3' miRNA: 3'- uaGGCGCGcACGa----UGCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 15742 | 0.69 | 0.61715 |
Target: 5'- cGUCCGCGCGcagGC--CGACCGCCuCGc -3' miRNA: 3'- -UAGGCGCGCa--CGauGCUGGUGGuGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 48668 | 0.69 | 0.627469 |
Target: 5'- -gCCGCGCG-GCaACGGCgACUACGg -3' miRNA: 3'- uaGGCGCGCaCGaUGCUGgUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 95388 | 0.68 | 0.637792 |
Target: 5'- -cCCgGCGCGccGCUcGCGGCCAUCACGg -3' miRNA: 3'- uaGG-CGCGCa-CGA-UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 101535 | 0.68 | 0.637792 |
Target: 5'- -gUCGCGCGccGCcuCGGCCGCCACGa -3' miRNA: 3'- uaGGCGCGCa-CGauGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 128837 | 0.68 | 0.637792 |
Target: 5'- -cUCGCGCG-GCU--GGCCGCCACGg -3' miRNA: 3'- uaGGCGCGCaCGAugCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 130101 | 0.68 | 0.637792 |
Target: 5'- gGUCCGCGCcagcgacUGCgccuugGCGAgCCGCCGCGc -3' miRNA: 3'- -UAGGCGCGc------ACGa-----UGCU-GGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 106407 | 0.68 | 0.64811 |
Target: 5'- cAUCCGCGCGgcGCUGCagcgGGCCGcgguCCACGc -3' miRNA: 3'- -UAGGCGCGCa-CGAUG----CUGGU----GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 39459 | 0.68 | 0.658415 |
Target: 5'- cUCCGCGCGgcgcgGCgccccaACGGgcCCGCCGCGg -3' miRNA: 3'- uAGGCGCGCa----CGa-----UGCU--GGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 90530 | 0.68 | 0.668699 |
Target: 5'- cAUCCGCGCGcGCaucccCG-CCGCCGCGc -3' miRNA: 3'- -UAGGCGCGCaCGau---GCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 69481 | 0.68 | 0.668699 |
Target: 5'- cAUCCGCGCGaUGCUG-GugCACCuguACGc -3' miRNA: 3'- -UAGGCGCGC-ACGAUgCugGUGG---UGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 67120 | 0.68 | 0.668699 |
Target: 5'- --gCGCGCaGUGCgGCGGCCcgACCGCGg -3' miRNA: 3'- uagGCGCG-CACGaUGCUGG--UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 49538 | 0.68 | 0.668699 |
Target: 5'- -gCCGC-CGU-CcGCGGCCACCACGUg -3' miRNA: 3'- uaGGCGcGCAcGaUGCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 115704 | 0.68 | 0.668699 |
Target: 5'- uGUCCGU-CGUGUagACGugCGCCACGg -3' miRNA: 3'- -UAGGCGcGCACGa-UGCugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 76368 | 0.68 | 0.668699 |
Target: 5'- --gCGCGCGUGCacccGCGcuGCCGCCGCc- -3' miRNA: 3'- uagGCGCGCACGa---UGC--UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 27980 | 0.68 | 0.668699 |
Target: 5'- uUCCGCGCGcGCUucucccgcCGGCCucuCCGCGa -3' miRNA: 3'- uAGGCGCGCaCGAu-------GCUGGu--GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 63723 | 0.68 | 0.678953 |
Target: 5'- gGUCCGUgagcgGCGUGCgcAUGGCCGCgGCGg -3' miRNA: 3'- -UAGGCG-----CGCACGa-UGCUGGUGgUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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