miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 131179 0.66 0.768365
Target:  5'- -gCCGCaGCG-GCUACGcCCGCgGCGc -3'
miRNA:   3'- uaGGCG-CGCaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 100732 0.66 0.768365
Target:  5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3'
miRNA:   3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 31133 0.66 0.768365
Target:  5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3'
miRNA:   3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 42262 0.66 0.767413
Target:  5'- -cCCGCGCGaggcgGCcGCGcccagcaGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCa----CGaUGC-------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 4846 0.66 0.762639
Target:  5'- cGUCCGCGCcgcagccucaaggGCgGCGGCCACgACGg -3'
miRNA:   3'- -UAGGCGCGca-----------CGaUGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 15799 0.66 0.758798
Target:  5'- -cCCGCGCG-GCcaGCG-CCGCCACc- -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 100220 0.66 0.758798
Target:  5'- -cCCGCGUagaGCU-CGGCCACCGCc- -3'
miRNA:   3'- uaGGCGCGca-CGAuGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 108417 0.66 0.758798
Target:  5'- -aCCGCgccuGCGUGC-ACGGCaACCGCGUc -3'
miRNA:   3'- uaGGCG----CGCACGaUGCUGgUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 110345 0.66 0.755905
Target:  5'- -gCUGCGCGcGCaccUgauuuccaacucggGCGACCGCCGCAUg -3'
miRNA:   3'- uaGGCGCGCaCG---A--------------UGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 73125 0.66 0.754939
Target:  5'- cGUCCGCGCGguccccgggccggGCUcGCG-CCGCCAgGc -3'
miRNA:   3'- -UAGGCGCGCa------------CGA-UGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 56432 0.67 0.749117
Target:  5'- -cCCGCcuGCGgagGCgGCGGCgCACCGCAa -3'
miRNA:   3'- uaGGCG--CGCa--CGaUGCUG-GUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 55418 0.67 0.749117
Target:  5'- --gCGCGCGccgGCUgGCG-CCACCGCGa -3'
miRNA:   3'- uagGCGCGCa--CGA-UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 53710 0.67 0.749117
Target:  5'- -gCCGCGCGccgcggccaGCUGCGGCgCGcCCGCAc -3'
miRNA:   3'- uaGGCGCGCa--------CGAUGCUG-GU-GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 32152 0.67 0.749117
Target:  5'- cUCgGCGCGccGCUGCGGCCgguguACCugGc -3'
miRNA:   3'- uAGgCGCGCa-CGAUGCUGG-----UGGugUa -5'
23761 3' -57.9 NC_005261.1 + 118083 0.67 0.749117
Target:  5'- -gCCGCGCucgucUGCUgGCGGCCcGCCGCGc -3'
miRNA:   3'- uaGGCGCGc----ACGA-UGCUGG-UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 130690 0.67 0.749117
Target:  5'- --gCGCGCGUGCUGCucGAgCACCuCGc -3'
miRNA:   3'- uagGCGCGCACGAUG--CUgGUGGuGUa -5'
23761 3' -57.9 NC_005261.1 + 103442 0.67 0.739331
Target:  5'- --gCGCGCGccucGCgguCGGCCGCCGCGc -3'
miRNA:   3'- uagGCGCGCa---CGau-GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 51971 0.67 0.739331
Target:  5'- -gCCGCGC-UGCUG-GACCGCgGCGc -3'
miRNA:   3'- uaGGCGCGcACGAUgCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 67945 0.67 0.739331
Target:  5'- -cCCGC-CGgcccGCUcgcGCGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGcGCa---CGA---UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 77039 0.67 0.739331
Target:  5'- -gCCGCGCGcGCggcccuCGGCgACCGCGc -3'
miRNA:   3'- uaGGCGCGCaCGau----GCUGgUGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.