miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 101060 0.67 0.730443
Target:  5'- cGUCCGCGCGcagccccagcaccacGCccGCGGCCGCCuGCAg -3'
miRNA:   3'- -UAGGCGCGCa--------------CGa-UGCUGGUGG-UGUa -5'
23761 3' -57.9 NC_005261.1 + 121913 0.67 0.729451
Target:  5'- cGUCUGCGCGccgUGCG-CCGCCACGc -3'
miRNA:   3'- -UAGGCGCGCacgAUGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 70923 0.67 0.729451
Target:  5'- -cCCGCGCGaGCUccaGCG-CCugCGCGUc -3'
miRNA:   3'- uaGGCGCGCaCGA---UGCuGGugGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 104122 0.67 0.729451
Target:  5'- -gCCGCGCGguucgccgcgaGCU-CGGCCGCCAgGUc -3'
miRNA:   3'- uaGGCGCGCa----------CGAuGCUGGUGGUgUA- -5'
23761 3' -57.9 NC_005261.1 + 118214 0.67 0.719485
Target:  5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 1717 0.67 0.719485
Target:  5'- -cUCGCGCGgcgGC-ACGGgCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 4295 0.67 0.719485
Target:  5'- -gCCGCGgGccCcGCGGCCGCCGCGUa -3'
miRNA:   3'- uaGGCGCgCacGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 81717 0.67 0.709442
Target:  5'- gGUCCGCGCGcaGCaGCGGCacgcguCCGCAg -3'
miRNA:   3'- -UAGGCGCGCa-CGaUGCUGgu----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 68668 0.67 0.709442
Target:  5'- -cCCGCGCc-GCcgGCGuCCGCCGCGUg -3'
miRNA:   3'- uaGGCGCGcaCGa-UGCuGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 118273 0.67 0.699334
Target:  5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 97386 0.67 0.699334
Target:  5'- -gCCGCGCG-GCUuucGCGcCUGCCGCGg -3'
miRNA:   3'- uaGGCGCGCaCGA---UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 98758 0.67 0.699334
Target:  5'- -gCCGCGCGguugccGCUGCcGCCGCCGg-- -3'
miRNA:   3'- uaGGCGCGCa-----CGAUGcUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 119063 0.67 0.699334
Target:  5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3'
miRNA:   3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 100677 0.67 0.699334
Target:  5'- gGUUCGCGCGcgagUGCaccGCGGCCGCgGCGc -3'
miRNA:   3'- -UAGGCGCGC----ACGa--UGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 64054 0.68 0.689167
Target:  5'- -gCCGCGUgGUGCgccacCGGCUGCCGCAc -3'
miRNA:   3'- uaGGCGCG-CACGau---GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 121071 0.68 0.689167
Target:  5'- gGUgUGCGCG-GCgccgGCGGCCGCCAg-- -3'
miRNA:   3'- -UAgGCGCGCaCGa---UGCUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 46961 0.68 0.678953
Target:  5'- aGUCCGCGcCGUcGCcGCuGCCGCCGCc- -3'
miRNA:   3'- -UAGGCGC-GCA-CGaUGcUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 102523 0.68 0.678953
Target:  5'- gGUCCGCGUGcaGCUugG-CCGCCuGCGg -3'
miRNA:   3'- -UAGGCGCGCa-CGAugCuGGUGG-UGUa -5'
23761 3' -57.9 NC_005261.1 + 109232 0.68 0.678953
Target:  5'- -gCCGCGCGcUGCagcGCGGCCcagugcgggGCCACGa -3'
miRNA:   3'- uaGGCGCGC-ACGa--UGCUGG---------UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 63723 0.68 0.678953
Target:  5'- gGUCCGUgagcgGCGUGCgcAUGGCCGCgGCGg -3'
miRNA:   3'- -UAGGCG-----CGCACGa-UGCUGGUGgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.