miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 1717 0.67 0.719485
Target:  5'- -cUCGCGCGgcgGC-ACGGgCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 3864 0.66 0.787119
Target:  5'- -gCCGCGCG-GCcgGCGAgCACgGCGc -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCUgGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 4295 0.67 0.719485
Target:  5'- -gCCGCGgGccCcGCGGCCGCCGCGUa -3'
miRNA:   3'- uaGGCGCgCacGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 4846 0.66 0.762639
Target:  5'- cGUCCGCGCcgcagccucaaggGCgGCGGCCACgACGg -3'
miRNA:   3'- -UAGGCGCGca-----------CGaUGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 12518 0.66 0.768365
Target:  5'- -aCCGCGCGggGCcccGCG-CCGCCGCc- -3'
miRNA:   3'- uaGGCGCGCa-CGa--UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 15742 0.69 0.61715
Target:  5'- cGUCCGCGCGcagGC--CGACCGCCuCGc -3'
miRNA:   3'- -UAGGCGCGCa--CGauGCUGGUGGuGUa -5'
23761 3' -57.9 NC_005261.1 + 15799 0.66 0.758798
Target:  5'- -cCCGCGCG-GCcaGCG-CCGCCACc- -3'
miRNA:   3'- uaGGCGCGCaCGa-UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 21780 0.66 0.787119
Target:  5'- -gCCGcCGCG-GCgcgGGCCGCCGCAg -3'
miRNA:   3'- uaGGC-GCGCaCGaugCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 21832 0.66 0.768365
Target:  5'- --gCGCGCGUGCggGCGggcucGCC-CCGCAg -3'
miRNA:   3'- uagGCGCGCACGa-UGC-----UGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 27980 0.68 0.668699
Target:  5'- uUCCGCGCGcGCUucucccgcCGGCCucuCCGCGa -3'
miRNA:   3'- uAGGCGCGCaCGAu-------GCUGGu--GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 29228 0.66 0.796288
Target:  5'- -cCCGCGCaG-GCUACG-CCGCgGCGc -3'
miRNA:   3'- uaGGCGCG-CaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 29394 0.66 0.787119
Target:  5'- gAUCCGCgaggcggccGCGcGCUacGCGGCgGCCGCGg -3'
miRNA:   3'- -UAGGCG---------CGCaCGA--UGCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 30177 0.73 0.387128
Target:  5'- -gCCGCGC-UGCgcgccgagGCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCGcACGa-------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 31133 0.66 0.768365
Target:  5'- uUCCGcCGCGUGCcgcccgGgGAgUACCACAc -3'
miRNA:   3'- uAGGC-GCGCACGa-----UgCUgGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 31781 0.66 0.787119
Target:  5'- -gCCGCG-GUGCUGCccgcggcgcaGugCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCACGAUG----------CugGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 32152 0.67 0.749117
Target:  5'- cUCgGCGCGccGCUGCGGCCgguguACCugGc -3'
miRNA:   3'- uAGgCGCGCa-CGAUGCUGG-----UGGugUa -5'
23761 3' -57.9 NC_005261.1 + 33371 0.76 0.249692
Target:  5'- -gCCGCGCcggGCUGCgGGCCGCCGCAg -3'
miRNA:   3'- uaGGCGCGca-CGAUG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 37542 0.71 0.467547
Target:  5'- gGUCCGCGCGccGCUcccGCcGCCGCCACc- -3'
miRNA:   3'- -UAGGCGCGCa-CGA---UGcUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 39459 0.68 0.658415
Target:  5'- cUCCGCGCGgcgcgGCgccccaACGGgcCCGCCGCGg -3'
miRNA:   3'- uAGGCGCGCa----CGa-----UGCU--GGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 39528 0.66 0.796288
Target:  5'- -gCCGCGCGccuCUacGCGGCCGCCAg-- -3'
miRNA:   3'- uaGGCGCGCac-GA--UGCUGGUGGUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.