miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 42262 0.66 0.767413
Target:  5'- -cCCGCGCGaggcgGCcGCGcccagcaGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCa----CGaUGC-------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 44019 0.75 0.295045
Target:  5'- uUCgGCGCG-GCggGCGGCCGCCGCGc -3'
miRNA:   3'- uAGgCGCGCaCGa-UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 44973 0.66 0.777808
Target:  5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3'
miRNA:   3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 45477 0.69 0.606842
Target:  5'- --aCGCGCGUGCUgaacACGGCCAUgUGCAUg -3'
miRNA:   3'- uagGCGCGCACGA----UGCUGGUG-GUGUA- -5'
23761 3' -57.9 NC_005261.1 + 46667 0.78 0.185467
Target:  5'- uUCCGCGCGUuggccgcgcGCUccacgGCGGCCGCCACGg -3'
miRNA:   3'- uAGGCGCGCA---------CGA-----UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 46961 0.68 0.678953
Target:  5'- aGUCCGCGcCGUcGCcGCuGCCGCCGCc- -3'
miRNA:   3'- -UAGGCGC-GCA-CGaUGcUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 47617 0.69 0.61715
Target:  5'- -cCUGCGgGggcgGCcGCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCa---CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 47802 0.72 0.421754
Target:  5'- gAUCCGCGCGcGCaGCG-CCACCAgGg -3'
miRNA:   3'- -UAGGCGCGCaCGaUGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 48668 0.69 0.627469
Target:  5'- -gCCGCGCG-GCaACGGCgACUACGg -3'
miRNA:   3'- uaGGCGCGCaCGaUGCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 49538 0.68 0.668699
Target:  5'- -gCCGC-CGU-CcGCGGCCACCACGUg -3'
miRNA:   3'- uaGGCGcGCAcGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 50037 0.7 0.54565
Target:  5'- -gCCGCGCGacggUGCaGCG-CCGCCGCGa -3'
miRNA:   3'- uaGGCGCGC----ACGaUGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 50823 0.69 0.61715
Target:  5'- cUCCGCGCG-GCUugG--CGCCGCGa -3'
miRNA:   3'- uAGGCGCGCaCGAugCugGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 51882 0.7 0.565877
Target:  5'- -gCCGCGCGgcaGCaGCGGCgCGCUACAUc -3'
miRNA:   3'- uaGGCGCGCa--CGaUGCUG-GUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 51971 0.67 0.739331
Target:  5'- -gCCGCGC-UGCUG-GACCGCgGCGc -3'
miRNA:   3'- uaGGCGCGcACGAUgCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 52568 0.74 0.346561
Target:  5'- cUCgCGCGCGaGCUcgccguCGACCACCACAg -3'
miRNA:   3'- uAG-GCGCGCaCGAu-----GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 53710 0.67 0.749117
Target:  5'- -gCCGCGCGccgcggccaGCUGCGGCgCGcCCGCAc -3'
miRNA:   3'- uaGGCGCGCa--------CGAUGCUG-GU-GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 53993 0.66 0.768365
Target:  5'- cUCCaGCGCGcgGCgcacagGCG-CCGCCGCGa -3'
miRNA:   3'- uAGG-CGCGCa-CGa-----UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 55418 0.67 0.749117
Target:  5'- --gCGCGCGccgGCUgGCG-CCACCGCGa -3'
miRNA:   3'- uagGCGCGCa--CGA-UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 56432 0.67 0.749117
Target:  5'- -cCCGCcuGCGgagGCgGCGGCgCACCGCAa -3'
miRNA:   3'- uaGGCG--CGCa--CGaUGCUG-GUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 57367 0.66 0.777808
Target:  5'- -cCCGCGCG-GCccgACGcCCGCCAgCAg -3'
miRNA:   3'- uaGGCGCGCaCGa--UGCuGGUGGU-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.