miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 57931 0.66 0.777808
Target:  5'- --aCGCGCGUGCUGCccggcACCAgCGCc- -3'
miRNA:   3'- uagGCGCGCACGAUGc----UGGUgGUGua -5'
23761 3' -57.9 NC_005261.1 + 60203 0.7 0.54565
Target:  5'- aGUCCGCGCGcGC-GCucCCGCCGCGg -3'
miRNA:   3'- -UAGGCGCGCaCGaUGcuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 60704 0.73 0.395608
Target:  5'- -gCCGCGCGUgGCggcgcacgGCGguGCCACCGCGUg -3'
miRNA:   3'- uaGGCGCGCA-CGa-------UGC--UGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 62302 0.71 0.486571
Target:  5'- -gCCGCGCGggcGCgcgGCGGCC-CCGCGg -3'
miRNA:   3'- uaGGCGCGCa--CGa--UGCUGGuGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 63020 0.66 0.768365
Target:  5'- -cCCGCGCGgGCgccgGCGcCCGCgGCGa -3'
miRNA:   3'- uaGGCGCGCaCGa---UGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 63723 0.68 0.678953
Target:  5'- gGUCCGUgagcgGCGUGCgcAUGGCCGCgGCGg -3'
miRNA:   3'- -UAGGCG-----CGCACGa-UGCUGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 64054 0.68 0.689167
Target:  5'- -gCCGCGUgGUGCgccacCGGCUGCCGCAc -3'
miRNA:   3'- uaGGCGCG-CACGau---GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 64838 0.71 0.505954
Target:  5'- gGUCCGCGCGcUGCaGCG-CCaugACCGCGUc -3'
miRNA:   3'- -UAGGCGCGC-ACGaUGCuGG---UGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 67120 0.68 0.668699
Target:  5'- --gCGCGCaGUGCgGCGGCCcgACCGCGg -3'
miRNA:   3'- uagGCGCG-CACGaUGCUGG--UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 67301 0.7 0.555736
Target:  5'- -gCCGCGCGcGCgccgccguCGGCCGCCGCc- -3'
miRNA:   3'- uaGGCGCGCaCGau------GCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 67945 0.67 0.739331
Target:  5'- -cCCGC-CGgcccGCUcgcGCGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGcGCa---CGA---UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 68668 0.67 0.709442
Target:  5'- -cCCGCGCc-GCcgGCGuCCGCCGCGUg -3'
miRNA:   3'- uaGGCGCGcaCGa-UGCuGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 69481 0.68 0.668699
Target:  5'- cAUCCGCGCGaUGCUG-GugCACCuguACGc -3'
miRNA:   3'- -UAGGCGCGC-ACGAUgCugGUGG---UGUa -5'
23761 3' -57.9 NC_005261.1 + 70923 0.67 0.729451
Target:  5'- -cCCGCGCGaGCUccaGCG-CCugCGCGUc -3'
miRNA:   3'- uaGGCGCGCaCGA---UGCuGGugGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 72733 0.7 0.515769
Target:  5'- cGUCCGCGCGg---GCGGCCcgcauggcggGCCGCAUg -3'
miRNA:   3'- -UAGGCGCGCacgaUGCUGG----------UGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 73125 0.66 0.754939
Target:  5'- cGUCCGCGCGguccccgggccggGCUcGCG-CCGCCAgGc -3'
miRNA:   3'- -UAGGCGCGCa------------CGA-UGCuGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 74278 0.66 0.796288
Target:  5'- cGUCCGCgGCGgGCgggGCGGUCGCCGCc- -3'
miRNA:   3'- -UAGGCG-CGCaCGa--UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 74688 0.71 0.505954
Target:  5'- -aCCGCGCG-GgaGCuGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCGCaCgaUG-CUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 76368 0.68 0.668699
Target:  5'- --gCGCGCGUGCacccGCGcuGCCGCCGCc- -3'
miRNA:   3'- uagGCGCGCACGa---UGC--UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 76915 0.77 0.220938
Target:  5'- -gCUGUGCGUGCUG-GGCCGCCGCGUc -3'
miRNA:   3'- uaGGCGCGCACGAUgCUGGUGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.