Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 109232 | 0.68 | 0.678953 |
Target: 5'- -gCCGCGCGcUGCagcGCGGCCcagugcgggGCCACGa -3' miRNA: 3'- uaGGCGCGC-ACGa--UGCUGG---------UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 110345 | 0.66 | 0.755905 |
Target: 5'- -gCUGCGCGcGCaccUgauuuccaacucggGCGACCGCCGCAUg -3' miRNA: 3'- uaGGCGCGCaCG---A--------------UGCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 112960 | 0.69 | 0.61715 |
Target: 5'- -gCCGCGC-UGUccacgGCGGCCGCCACc- -3' miRNA: 3'- uaGGCGCGcACGa----UGCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 113041 | 0.72 | 0.45818 |
Target: 5'- -gCCGCGCGcgGCgugGCGcGCCACCGCu- -3' miRNA: 3'- uaGGCGCGCa-CGa--UGC-UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 115704 | 0.68 | 0.668699 |
Target: 5'- uGUCCGU-CGUGUagACGugCGCCACGg -3' miRNA: 3'- -UAGGCGcGCACGa-UGCugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118083 | 0.67 | 0.749117 |
Target: 5'- -gCCGCGCucgucUGCUgGCGGCCcGCCGCGc -3' miRNA: 3'- uaGGCGCGc----ACGA-UGCUGG-UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118214 | 0.67 | 0.719485 |
Target: 5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3' miRNA: 3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118273 | 0.67 | 0.699334 |
Target: 5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3' miRNA: 3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118419 | 0.66 | 0.787119 |
Target: 5'- -gCCGCGCuG-GCUGuCG-CCGCCGCGg -3' miRNA: 3'- uaGGCGCG-CaCGAU-GCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118572 | 0.69 | 0.586292 |
Target: 5'- -cCCGCGCGcGCggcgGCGcgcgccGCCGCCGCGg -3' miRNA: 3'- uaGGCGCGCaCGa---UGC------UGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 119063 | 0.67 | 0.699334 |
Target: 5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3' miRNA: 3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 121071 | 0.68 | 0.689167 |
Target: 5'- gGUgUGCGCG-GCgccgGCGGCCGCCAg-- -3' miRNA: 3'- -UAgGCGCGCaCGa---UGCUGGUGGUgua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 121913 | 0.67 | 0.729451 |
Target: 5'- cGUCUGCGCGccgUGCG-CCGCCACGc -3' miRNA: 3'- -UAGGCGCGCacgAUGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 125717 | 0.73 | 0.395608 |
Target: 5'- -gCCGcCGCGggcucgGCUGgGGCCGCCGCAa -3' miRNA: 3'- uaGGC-GCGCa-----CGAUgCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 128837 | 0.68 | 0.637792 |
Target: 5'- -cUCGCGCG-GCU--GGCCGCCACGg -3' miRNA: 3'- uaGGCGCGCaCGAugCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 130101 | 0.68 | 0.637792 |
Target: 5'- gGUCCGCGCcagcgacUGCgccuugGCGAgCCGCCGCGc -3' miRNA: 3'- -UAGGCGCGc------ACGa-----UGCU-GGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 130690 | 0.67 | 0.749117 |
Target: 5'- --gCGCGCGUGCUGCucGAgCACCuCGc -3' miRNA: 3'- uagGCGCGCACGAUG--CUgGUGGuGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 131179 | 0.66 | 0.768365 |
Target: 5'- -gCCGCaGCG-GCUACGcCCGCgGCGc -3' miRNA: 3'- uaGGCG-CGCaCGAUGCuGGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 131261 | 0.7 | 0.536622 |
Target: 5'- gGUCCGCuGCcUGCgugaguacaucgaccACGACCGCCGCAg -3' miRNA: 3'- -UAGGCG-CGcACGa--------------UGCUGGUGGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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