miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 131261 0.7 0.536622
Target:  5'- gGUCCGCuGCcUGCgugaguacaucgaccACGACCGCCGCAg -3'
miRNA:   3'- -UAGGCG-CGcACGa--------------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 131179 0.66 0.768365
Target:  5'- -gCCGCaGCG-GCUACGcCCGCgGCGc -3'
miRNA:   3'- uaGGCG-CGCaCGAUGCuGGUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 130690 0.67 0.749117
Target:  5'- --gCGCGCGUGCUGCucGAgCACCuCGc -3'
miRNA:   3'- uagGCGCGCACGAUG--CUgGUGGuGUa -5'
23761 3' -57.9 NC_005261.1 + 130101 0.68 0.637792
Target:  5'- gGUCCGCGCcagcgacUGCgccuugGCGAgCCGCCGCGc -3'
miRNA:   3'- -UAGGCGCGc------ACGa-----UGCU-GGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 128837 0.68 0.637792
Target:  5'- -cUCGCGCG-GCU--GGCCGCCACGg -3'
miRNA:   3'- uaGGCGCGCaCGAugCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 125717 0.73 0.395608
Target:  5'- -gCCGcCGCGggcucgGCUGgGGCCGCCGCAa -3'
miRNA:   3'- uaGGC-GCGCa-----CGAUgCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 121913 0.67 0.729451
Target:  5'- cGUCUGCGCGccgUGCG-CCGCCACGc -3'
miRNA:   3'- -UAGGCGCGCacgAUGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 121071 0.68 0.689167
Target:  5'- gGUgUGCGCG-GCgccgGCGGCCGCCAg-- -3'
miRNA:   3'- -UAgGCGCGCaCGa---UGCUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 119063 0.67 0.699334
Target:  5'- -gCCGCGCGUGUgcuuucgUGGCCcggGCCACGa -3'
miRNA:   3'- uaGGCGCGCACGau-----GCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118572 0.69 0.586292
Target:  5'- -cCCGCGCGcGCggcgGCGcgcgccGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCaCGa---UGC------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118419 0.66 0.787119
Target:  5'- -gCCGCGCuG-GCUGuCG-CCGCCGCGg -3'
miRNA:   3'- uaGGCGCG-CaCGAU-GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118273 0.67 0.699334
Target:  5'- -aCUGCGCGcacuucGUgACGGCCGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-----CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118214 0.67 0.719485
Target:  5'- -gCUGCGCGggGCgcugACGGCCgcgGCCGCGg -3'
miRNA:   3'- uaGGCGCGCa-CGa---UGCUGG---UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 118083 0.67 0.749117
Target:  5'- -gCCGCGCucgucUGCUgGCGGCCcGCCGCGc -3'
miRNA:   3'- uaGGCGCGc----ACGA-UGCUGG-UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 115704 0.68 0.668699
Target:  5'- uGUCCGU-CGUGUagACGugCGCCACGg -3'
miRNA:   3'- -UAGGCGcGCACGa-UGCugGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 113041 0.72 0.45818
Target:  5'- -gCCGCGCGcgGCgugGCGcGCCACCGCu- -3'
miRNA:   3'- uaGGCGCGCa-CGa--UGC-UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 112960 0.69 0.61715
Target:  5'- -gCCGCGC-UGUccacgGCGGCCGCCACc- -3'
miRNA:   3'- uaGGCGCGcACGa----UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 110345 0.66 0.755905
Target:  5'- -gCUGCGCGcGCaccUgauuuccaacucggGCGACCGCCGCAUg -3'
miRNA:   3'- uaGGCGCGCaCG---A--------------UGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 109232 0.68 0.678953
Target:  5'- -gCCGCGCGcUGCagcGCGGCCcagugcgggGCCACGa -3'
miRNA:   3'- uaGGCGCGC-ACGa--UGCUGG---------UGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 108417 0.66 0.758798
Target:  5'- -aCCGCgccuGCGUGC-ACGGCaACCGCGUc -3'
miRNA:   3'- uaGGCG----CGCACGaUGCUGgUGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.