miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 108324 0.7 0.54565
Target:  5'- -gCCGcCGCGUGCUccGCGACCcgcGCCAgGg -3'
miRNA:   3'- uaGGC-GCGCACGA--UGCUGG---UGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 107807 0.7 0.565877
Target:  5'- cUCgCGCGCGgcgGCccuaGCGGCCGCCGCc- -3'
miRNA:   3'- uAG-GCGCGCa--CGa---UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 107301 0.77 0.220938
Target:  5'- cUCCGcCGCG-GCcACGGCCGCCGCGUg -3'
miRNA:   3'- uAGGC-GCGCaCGaUGCUGGUGGUGUA- -5'
23761 3' -57.9 NC_005261.1 + 106908 0.66 0.777808
Target:  5'- cGUCCGCGCcgcggcgcGCUGCagGGCCGCCAg-- -3'
miRNA:   3'- -UAGGCGCGca------CGAUG--CUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 106407 0.68 0.64811
Target:  5'- cAUCCGCGCGgcGCUGCagcgGGCCGcgguCCACGc -3'
miRNA:   3'- -UAGGCGCGCa-CGAUG----CUGGU----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 105219 0.7 0.535622
Target:  5'- -gCCGCGCGgGCcGCGGCCGCgGCc- -3'
miRNA:   3'- uaGGCGCGCaCGaUGCUGGUGgUGua -5'
23761 3' -57.9 NC_005261.1 + 104671 0.69 0.606842
Target:  5'- ---gGCGUGUGCUGCGgcagcgccuggGCCACCGCc- -3'
miRNA:   3'- uaggCGCGCACGAUGC-----------UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 104514 0.69 0.606842
Target:  5'- cUCCGUgGCGgccGCgacgGCGGCCGCCACc- -3'
miRNA:   3'- uAGGCG-CGCa--CGa---UGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 104122 0.67 0.729451
Target:  5'- -gCCGCGCGguucgccgcgaGCU-CGGCCGCCAgGUc -3'
miRNA:   3'- uaGGCGCGCa----------CGAuGCUGGUGGUgUA- -5'
23761 3' -57.9 NC_005261.1 + 103955 0.71 0.505954
Target:  5'- -gCgGCGCGaccGCgGCGGCCGCCACAc -3'
miRNA:   3'- uaGgCGCGCa--CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 103442 0.67 0.739331
Target:  5'- --gCGCGCGccucGCgguCGGCCGCCGCGc -3'
miRNA:   3'- uagGCGCGCa---CGau-GCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 103417 0.76 0.249692
Target:  5'- cUCCGCGCGgGCcGCGGCCACgCGCGc -3'
miRNA:   3'- uAGGCGCGCaCGaUGCUGGUG-GUGUa -5'
23761 3' -57.9 NC_005261.1 + 103354 0.7 0.562829
Target:  5'- cUCCGCGCGccGCUcccccagcucggccGCGcGCCGCCGCGc -3'
miRNA:   3'- uAGGCGCGCa-CGA--------------UGC-UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 102986 0.73 0.387128
Target:  5'- -gCCGCGCGcGacacgGCGGCCGCCACGc -3'
miRNA:   3'- uaGGCGCGCaCga---UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 102523 0.68 0.678953
Target:  5'- gGUCCGCGUGcaGCUugG-CCGCCuGCGg -3'
miRNA:   3'- -UAGGCGCGCa-CGAugCuGGUGG-UGUa -5'
23761 3' -57.9 NC_005261.1 + 101535 0.68 0.637792
Target:  5'- -gUCGCGCGccGCcuCGGCCGCCACGa -3'
miRNA:   3'- uaGGCGCGCa-CGauGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 101149 0.73 0.395608
Target:  5'- -gCCGCGCG-GCgGCGcGCCGCCGCGa -3'
miRNA:   3'- uaGGCGCGCaCGaUGC-UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 101060 0.67 0.730443
Target:  5'- cGUCCGCGCGcagccccagcaccacGCccGCGGCCGCCuGCAg -3'
miRNA:   3'- -UAGGCGCGCa--------------CGa-UGCUGGUGG-UGUa -5'
23761 3' -57.9 NC_005261.1 + 100732 0.66 0.768365
Target:  5'- -gCCGCGCGcGCgcgcgGCGGCgCGCgGCAc -3'
miRNA:   3'- uaGGCGCGCaCGa----UGCUG-GUGgUGUa -5'
23761 3' -57.9 NC_005261.1 + 100677 0.67 0.699334
Target:  5'- gGUUCGCGCGcgagUGCaccGCGGCCGCgGCGc -3'
miRNA:   3'- -UAGGCGCGC----ACGa--UGCUGGUGgUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.