miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 3' -57.9 NC_005261.1 + 100220 0.66 0.758798
Target:  5'- -cCCGCGUagaGCU-CGGCCACCGCc- -3'
miRNA:   3'- uaGGCGCGca-CGAuGCUGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 100038 0.66 0.796288
Target:  5'- gGUCCGCggGCGUcaGCUcgaGCGcGCCGCCGCc- -3'
miRNA:   3'- -UAGGCG--CGCA--CGA---UGC-UGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 99719 0.7 0.555736
Target:  5'- gGUCgCGCGCGUgGCcGCGucaggcgcguGCCGCCACAc -3'
miRNA:   3'- -UAG-GCGCGCA-CGaUGC----------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 98792 0.66 0.796288
Target:  5'- -gCCGCGCGUGCgaaACGggucGCCgGCgGCGUg -3'
miRNA:   3'- uaGGCGCGCACGa--UGC----UGG-UGgUGUA- -5'
23761 3' -57.9 NC_005261.1 + 98758 0.67 0.699334
Target:  5'- -gCCGCGCGguugccGCUGCcGCCGCCGg-- -3'
miRNA:   3'- uaGGCGCGCa-----CGAUGcUGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 97386 0.67 0.699334
Target:  5'- -gCCGCGCG-GCUuucGCGcCUGCCGCGg -3'
miRNA:   3'- uaGGCGCGCaCGA---UGCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 96168 0.78 0.19359
Target:  5'- -gCCGCGCGUGCccauguuugcgacgUACGACCACgCGCAc -3'
miRNA:   3'- uaGGCGCGCACG--------------AUGCUGGUG-GUGUa -5'
23761 3' -57.9 NC_005261.1 + 95388 0.68 0.637792
Target:  5'- -cCCgGCGCGccGCUcGCGGCCAUCACGg -3'
miRNA:   3'- uaGG-CGCGCa-CGA-UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 93810 0.69 0.586292
Target:  5'- -gCCGCGCGccGCcGCcACCGCCGCAg -3'
miRNA:   3'- uaGGCGCGCa-CGaUGcUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 92323 0.66 0.787119
Target:  5'- gGUCCGCGCG-GCccauccGCGgGCCACCGg-- -3'
miRNA:   3'- -UAGGCGCGCaCGa-----UGC-UGGUGGUgua -5'
23761 3' -57.9 NC_005261.1 + 90530 0.68 0.668699
Target:  5'- cAUCCGCGCGcGCaucccCG-CCGCCGCGc -3'
miRNA:   3'- -UAGGCGCGCaCGau---GCuGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 89416 0.75 0.295045
Target:  5'- cUCgGCGCGUGC-GCGGCCGCCGgGc -3'
miRNA:   3'- uAGgCGCGCACGaUGCUGGUGGUgUa -5'
23761 3' -57.9 NC_005261.1 + 87580 0.66 0.777808
Target:  5'- -cCCGCGCcgcccaggccgGUGgUcuuggugccgGCGACCACCGCGa -3'
miRNA:   3'- uaGGCGCG-----------CACgA----------UGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 87030 0.69 0.602724
Target:  5'- -cCCGCGCGccaccgcguccagGCUGCGcacacgcagcGCCACCGCGg -3'
miRNA:   3'- uaGGCGCGCa------------CGAUGC----------UGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 86900 0.7 0.52566
Target:  5'- gGUCCGCGCGcgGCgcggacccGCGuCCACCGCc- -3'
miRNA:   3'- -UAGGCGCGCa-CGa-------UGCuGGUGGUGua -5'
23761 3' -57.9 NC_005261.1 + 85014 0.69 0.606842
Target:  5'- -gCCGCGgGgucGC-GCGGCCGCCGCGc -3'
miRNA:   3'- uaGGCGCgCa--CGaUGCUGGUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 81717 0.67 0.709442
Target:  5'- gGUCCGCGCGcaGCaGCGGCacgcguCCGCAg -3'
miRNA:   3'- -UAGGCGCGCa-CGaUGCUGgu----GGUGUa -5'
23761 3' -57.9 NC_005261.1 + 79819 0.71 0.49622
Target:  5'- cAUgCGCGCGgcgGCgcgGCGGCCAgCGCAg -3'
miRNA:   3'- -UAgGCGCGCa--CGa--UGCUGGUgGUGUa -5'
23761 3' -57.9 NC_005261.1 + 77039 0.67 0.739331
Target:  5'- -gCCGCGCGcGCggcccuCGGCgACCGCGc -3'
miRNA:   3'- uaGGCGCGCaCGau----GCUGgUGGUGUa -5'
23761 3' -57.9 NC_005261.1 + 76915 0.77 0.220938
Target:  5'- -gCUGUGCGUGCUG-GGCCGCCGCGUc -3'
miRNA:   3'- uaGGCGCGCACGAUgCUGGUGGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.