Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 56432 | 0.67 | 0.749117 |
Target: 5'- -cCCGCcuGCGgagGCgGCGGCgCACCGCAa -3' miRNA: 3'- uaGGCG--CGCa--CGaUGCUG-GUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 55418 | 0.67 | 0.749117 |
Target: 5'- --gCGCGCGccgGCUgGCG-CCACCGCGa -3' miRNA: 3'- uagGCGCGCa--CGA-UGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 53993 | 0.66 | 0.768365 |
Target: 5'- cUCCaGCGCGcgGCgcacagGCG-CCGCCGCGa -3' miRNA: 3'- uAGG-CGCGCa-CGa-----UGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 53710 | 0.67 | 0.749117 |
Target: 5'- -gCCGCGCGccgcggccaGCUGCGGCgCGcCCGCAc -3' miRNA: 3'- uaGGCGCGCa--------CGAUGCUG-GU-GGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 52568 | 0.74 | 0.346561 |
Target: 5'- cUCgCGCGCGaGCUcgccguCGACCACCACAg -3' miRNA: 3'- uAG-GCGCGCaCGAu-----GCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 51971 | 0.67 | 0.739331 |
Target: 5'- -gCCGCGC-UGCUG-GACCGCgGCGc -3' miRNA: 3'- uaGGCGCGcACGAUgCUGGUGgUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 51882 | 0.7 | 0.565877 |
Target: 5'- -gCCGCGCGgcaGCaGCGGCgCGCUACAUc -3' miRNA: 3'- uaGGCGCGCa--CGaUGCUG-GUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 50823 | 0.69 | 0.61715 |
Target: 5'- cUCCGCGCG-GCUugG--CGCCGCGa -3' miRNA: 3'- uAGGCGCGCaCGAugCugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 50037 | 0.7 | 0.54565 |
Target: 5'- -gCCGCGCGacggUGCaGCG-CCGCCGCGa -3' miRNA: 3'- uaGGCGCGC----ACGaUGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 49538 | 0.68 | 0.668699 |
Target: 5'- -gCCGC-CGU-CcGCGGCCACCACGUg -3' miRNA: 3'- uaGGCGcGCAcGaUGCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 48668 | 0.69 | 0.627469 |
Target: 5'- -gCCGCGCG-GCaACGGCgACUACGg -3' miRNA: 3'- uaGGCGCGCaCGaUGCUGgUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 47802 | 0.72 | 0.421754 |
Target: 5'- gAUCCGCGCGcGCaGCG-CCACCAgGg -3' miRNA: 3'- -UAGGCGCGCaCGaUGCuGGUGGUgUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 47617 | 0.69 | 0.61715 |
Target: 5'- -cCUGCGgGggcgGCcGCGGCCGCCGCGc -3' miRNA: 3'- uaGGCGCgCa---CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 46961 | 0.68 | 0.678953 |
Target: 5'- aGUCCGCGcCGUcGCcGCuGCCGCCGCc- -3' miRNA: 3'- -UAGGCGC-GCA-CGaUGcUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 46667 | 0.78 | 0.185467 |
Target: 5'- uUCCGCGCGUuggccgcgcGCUccacgGCGGCCGCCACGg -3' miRNA: 3'- uAGGCGCGCA---------CGA-----UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 45477 | 0.69 | 0.606842 |
Target: 5'- --aCGCGCGUGCUgaacACGGCCAUgUGCAUg -3' miRNA: 3'- uagGCGCGCACGA----UGCUGGUG-GUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 44973 | 0.66 | 0.777808 |
Target: 5'- --gCGCGCGaggGCccggGCgGGCCGCCACAg -3' miRNA: 3'- uagGCGCGCa--CGa---UG-CUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 44019 | 0.75 | 0.295045 |
Target: 5'- uUCgGCGCG-GCggGCGGCCGCCGCGc -3' miRNA: 3'- uAGgCGCGCaCGa-UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 42262 | 0.66 | 0.767413 |
Target: 5'- -cCCGCGCGaggcgGCcGCGcccagcaGCCGCCGCGa -3' miRNA: 3'- uaGGCGCGCa----CGaUGC-------UGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 39528 | 0.66 | 0.796288 |
Target: 5'- -gCCGCGCGccuCUacGCGGCCGCCAg-- -3' miRNA: 3'- uaGGCGCGCac-GA--UGCUGGUGGUgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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