Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 103417 | 0.76 | 0.249692 |
Target: 5'- cUCCGCGCGgGCcGCGGCCACgCGCGc -3' miRNA: 3'- uAGGCGCGCaCGaUGCUGGUG-GUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 33371 | 0.76 | 0.249692 |
Target: 5'- -gCCGCGCcggGCUGCgGGCCGCCGCAg -3' miRNA: 3'- uaGGCGCGca-CGAUG-CUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 107301 | 0.77 | 0.220938 |
Target: 5'- cUCCGcCGCG-GCcACGGCCGCCGCGUg -3' miRNA: 3'- uAGGC-GCGCaCGaUGCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 76915 | 0.77 | 0.220938 |
Target: 5'- -gCUGUGCGUGCUG-GGCCGCCGCGUc -3' miRNA: 3'- uaGGCGCGCACGAUgCUGGUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 96168 | 0.78 | 0.19359 |
Target: 5'- -gCCGCGCGUGCccauguuugcgacgUACGACCACgCGCAc -3' miRNA: 3'- uaGGCGCGCACG--------------AUGCUGGUG-GUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 47802 | 0.72 | 0.421754 |
Target: 5'- gAUCCGCGCGcGCaGCG-CCACCAgGg -3' miRNA: 3'- -UAGGCGCGCaCGaUGCuGGUGGUgUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 113041 | 0.72 | 0.45818 |
Target: 5'- -gCCGCGCGcgGCgugGCGcGCCACCGCu- -3' miRNA: 3'- uaGGCGCGCa-CGa--UGC-UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 60203 | 0.7 | 0.54565 |
Target: 5'- aGUCCGCGCGcGC-GCucCCGCCGCGg -3' miRNA: 3'- -UAGGCGCGCaCGaUGcuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 50037 | 0.7 | 0.54565 |
Target: 5'- -gCCGCGCGacggUGCaGCG-CCGCCGCGa -3' miRNA: 3'- uaGGCGCGC----ACGaUGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 108324 | 0.7 | 0.54565 |
Target: 5'- -gCCGcCGCGUGCUccGCGACCcgcGCCAgGg -3' miRNA: 3'- uaGGC-GCGCACGA--UGCUGG---UGGUgUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 131261 | 0.7 | 0.536622 |
Target: 5'- gGUCCGCuGCcUGCgugaguacaucgaccACGACCGCCGCAg -3' miRNA: 3'- -UAGGCG-CGcACGa--------------UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 105219 | 0.7 | 0.535622 |
Target: 5'- -gCCGCGCGgGCcGCGGCCGCgGCc- -3' miRNA: 3'- uaGGCGCGCaCGaUGCUGGUGgUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 86900 | 0.7 | 0.52566 |
Target: 5'- gGUCCGCGCGcgGCgcggacccGCGuCCACCGCc- -3' miRNA: 3'- -UAGGCGCGCa-CGa-------UGCuGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 72733 | 0.7 | 0.515769 |
Target: 5'- cGUCCGCGCGg---GCGGCCcgcauggcggGCCGCAUg -3' miRNA: 3'- -UAGGCGCGCacgaUGCUGG----------UGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 74688 | 0.71 | 0.505954 |
Target: 5'- -aCCGCGCG-GgaGCuGGCCGCCGCGc -3' miRNA: 3'- uaGGCGCGCaCgaUG-CUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 103955 | 0.71 | 0.505954 |
Target: 5'- -gCgGCGCGaccGCgGCGGCCGCCACAc -3' miRNA: 3'- uaGgCGCGCa--CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 64838 | 0.71 | 0.505954 |
Target: 5'- gGUCCGCGCGcUGCaGCG-CCaugACCGCGUc -3' miRNA: 3'- -UAGGCGCGC-ACGaUGCuGG---UGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 79819 | 0.71 | 0.49622 |
Target: 5'- cAUgCGCGCGgcgGCgcgGCGGCCAgCGCAg -3' miRNA: 3'- -UAgGCGCGCa--CGa--UGCUGGUgGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 62302 | 0.71 | 0.486571 |
Target: 5'- -gCCGCGCGggcGCgcgGCGGCC-CCGCGg -3' miRNA: 3'- uaGGCGCGCa--CGa--UGCUGGuGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 37542 | 0.71 | 0.467547 |
Target: 5'- gGUCCGCGCGccGCUcccGCcGCCGCCACc- -3' miRNA: 3'- -UAGGCGCGCa-CGA---UGcUGGUGGUGua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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