Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 3' | -57.9 | NC_005261.1 | + | 50823 | 0.69 | 0.61715 |
Target: 5'- cUCCGCGCG-GCUugG--CGCCGCGa -3' miRNA: 3'- uAGGCGCGCaCGAugCugGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 112960 | 0.69 | 0.61715 |
Target: 5'- -gCCGCGC-UGUccacgGCGGCCGCCACc- -3' miRNA: 3'- uaGGCGCGcACGa----UGCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 15742 | 0.69 | 0.61715 |
Target: 5'- cGUCCGCGCGcagGC--CGACCGCCuCGc -3' miRNA: 3'- -UAGGCGCGCa--CGauGCUGGUGGuGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 48668 | 0.69 | 0.627469 |
Target: 5'- -gCCGCGCG-GCaACGGCgACUACGg -3' miRNA: 3'- uaGGCGCGCaCGaUGCUGgUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 95388 | 0.68 | 0.637792 |
Target: 5'- -cCCgGCGCGccGCUcGCGGCCAUCACGg -3' miRNA: 3'- uaGG-CGCGCa-CGA-UGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 101535 | 0.68 | 0.637792 |
Target: 5'- -gUCGCGCGccGCcuCGGCCGCCACGa -3' miRNA: 3'- uaGGCGCGCa-CGauGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 128837 | 0.68 | 0.637792 |
Target: 5'- -cUCGCGCG-GCU--GGCCGCCACGg -3' miRNA: 3'- uaGGCGCGCaCGAugCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 85014 | 0.69 | 0.606842 |
Target: 5'- -gCCGCGgGgucGC-GCGGCCGCCGCGc -3' miRNA: 3'- uaGGCGCgCa--CGaUGCUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 104671 | 0.69 | 0.606842 |
Target: 5'- ---gGCGUGUGCUGCGgcagcgccuggGCCACCGCc- -3' miRNA: 3'- uaggCGCGCACGAUGC-----------UGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 87030 | 0.69 | 0.602724 |
Target: 5'- -cCCGCGCGccaccgcguccagGCUGCGcacacgcagcGCCACCGCGg -3' miRNA: 3'- uaGGCGCGCa------------CGAUGC----------UGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 108324 | 0.7 | 0.54565 |
Target: 5'- -gCCGcCGCGUGCUccGCGACCcgcGCCAgGg -3' miRNA: 3'- uaGGC-GCGCACGA--UGCUGG---UGGUgUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 50037 | 0.7 | 0.54565 |
Target: 5'- -gCCGCGCGacggUGCaGCG-CCGCCGCGa -3' miRNA: 3'- uaGGCGCGC----ACGaUGCuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 60203 | 0.7 | 0.54565 |
Target: 5'- aGUCCGCGCGcGC-GCucCCGCCGCGg -3' miRNA: 3'- -UAGGCGCGCaCGaUGcuGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 67301 | 0.7 | 0.555736 |
Target: 5'- -gCCGCGCGcGCgccgccguCGGCCGCCGCc- -3' miRNA: 3'- uaGGCGCGCaCGau------GCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 99719 | 0.7 | 0.555736 |
Target: 5'- gGUCgCGCGCGUgGCcGCGucaggcgcguGCCGCCACAc -3' miRNA: 3'- -UAG-GCGCGCA-CGaUGC----------UGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 103354 | 0.7 | 0.562829 |
Target: 5'- cUCCGCGCGccGCUcccccagcucggccGCGcGCCGCCGCGc -3' miRNA: 3'- uAGGCGCGCa-CGA--------------UGC-UGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 51882 | 0.7 | 0.565877 |
Target: 5'- -gCCGCGCGgcaGCaGCGGCgCGCUACAUc -3' miRNA: 3'- uaGGCGCGCa--CGaUGCUG-GUGGUGUA- -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 107807 | 0.7 | 0.565877 |
Target: 5'- cUCgCGCGCGgcgGCccuaGCGGCCGCCGCc- -3' miRNA: 3'- uAG-GCGCGCa--CGa---UGCUGGUGGUGua -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 93810 | 0.69 | 0.586292 |
Target: 5'- -gCCGCGCGccGCcGCcACCGCCGCAg -3' miRNA: 3'- uaGGCGCGCa-CGaUGcUGGUGGUGUa -5' |
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23761 | 3' | -57.9 | NC_005261.1 | + | 118572 | 0.69 | 0.586292 |
Target: 5'- -cCCGCGCGcGCggcgGCGcgcgccGCCGCCGCGg -3' miRNA: 3'- uaGGCGCGCaCGa---UGC------UGGUGGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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