miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 53498 0.66 0.614861
Target:  5'- cGcgCCaGgGGCUCGuuauCGCGCCCGaaGGCu -3'
miRNA:   3'- aCuaGGcCgCCGAGU----GCGCGGGC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 15865 0.66 0.614861
Target:  5'- aGGUCgCGGCaauGGCUCGagucgcCGaCGCgCGGGCg -3'
miRNA:   3'- aCUAG-GCCG---CCGAGU------GC-GCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 57410 0.66 0.614861
Target:  5'- gUGAUCCgcGGcCGGCgcCGCGaGCCCaGGAUg -3'
miRNA:   3'- -ACUAGG--CC-GCCGa-GUGCgCGGG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 44954 0.66 0.614861
Target:  5'- gGAgagCCugcuGCGGgaCGCGCgcgaggGCCCGGGCg -3'
miRNA:   3'- aCUa--GGc---CGCCgaGUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 13044 0.66 0.614861
Target:  5'- aGggCgCGG-GGCcgCGCGCGCCCcugccGGGCg -3'
miRNA:   3'- aCuaG-GCCgCCGa-GUGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 105150 0.66 0.614861
Target:  5'- aGGUCCucGCGGCUCGagggcgGCGUCCacgGGGCc -3'
miRNA:   3'- aCUAGGc-CGCCGAGUg-----CGCGGG---CCUG- -5'
23761 5' -62.7 NC_005261.1 + 102994 0.66 0.614861
Target:  5'- cGAcaCGGCGGCcgcCACGCGCuCCGcguGGCu -3'
miRNA:   3'- aCUagGCCGCCGa--GUGCGCG-GGC---CUG- -5'
23761 5' -62.7 NC_005261.1 + 71070 0.66 0.614861
Target:  5'- ---gCCGcGCGGCggGCgggGCGUCCGGGCc -3'
miRNA:   3'- acuaGGC-CGCCGagUG---CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 66344 0.66 0.611911
Target:  5'- aGGUCUGcgaucuuggccagcGCGaGCUCGCGC-CCCGG-Cg -3'
miRNA:   3'- aCUAGGC--------------CGC-CGAGUGCGcGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 32495 0.66 0.608962
Target:  5'- cGGcgaCGGCGGCaUCGgcgggggguccgcgcCGCGCCCGGcCc -3'
miRNA:   3'- aCUag-GCCGCCG-AGU---------------GCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 35147 0.66 0.605032
Target:  5'- ---cCCcGCGGCgcaagCACGCGCaugCGGACc -3'
miRNA:   3'- acuaGGcCGCCGa----GUGCGCGg--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 15367 0.66 0.605032
Target:  5'- ---cCCGGCGGCgcUCG-GCGCCCucGGCg -3'
miRNA:   3'- acuaGGCCGCCG--AGUgCGCGGGc-CUG- -5'
23761 5' -62.7 NC_005261.1 + 32317 0.66 0.605032
Target:  5'- ---gCCGccGCGGC-CGCgGCGCCCGG-Cg -3'
miRNA:   3'- acuaGGC--CGCCGaGUG-CGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 108225 0.66 0.605032
Target:  5'- cGcUCCaGCauGGCgCACGUGCCCGG-Cg -3'
miRNA:   3'- aCuAGGcCG--CCGaGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 33512 0.66 0.605032
Target:  5'- aGGggCGGCGGCggcaccgCugGC-CCCGGGa -3'
miRNA:   3'- aCUagGCCGCCGa------GugCGcGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 83749 0.66 0.602087
Target:  5'- cGAggUGGCGGCgcgccacggccgggUCGCaGCGCCCGaGCa -3'
miRNA:   3'- aCUagGCCGCCG--------------AGUG-CGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 36803 0.66 0.595221
Target:  5'- uUGcgCCGGcCGGCgcUACGUGCcCCGGuauGCg -3'
miRNA:   3'- -ACuaGGCC-GCCGa-GUGCGCG-GGCC---UG- -5'
23761 5' -62.7 NC_005261.1 + 23216 0.66 0.595221
Target:  5'- ----gCGGCGGC-CGCGCGCaaaagCCGGuGCa -3'
miRNA:   3'- acuagGCCGCCGaGUGCGCG-----GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 44707 0.66 0.595221
Target:  5'- cGAUCUucaCGGCUgACGCGCgCaGGGCg -3'
miRNA:   3'- aCUAGGcc-GCCGAgUGCGCGgG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 35705 0.66 0.595221
Target:  5'- gUGggCCGGgGGCUCGgugGCGgcCCCGGcCg -3'
miRNA:   3'- -ACuaGGCCgCCGAGUg--CGC--GGGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.