Results 1 - 20 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23761 | 5' | -62.7 | NC_005261.1 | + | 31125 | 0.66 | 0.565964 |
Target: 5'- ----aCGGCGGCUuccgcCGCGUgccGCCCGGGg -3' miRNA: 3'- acuagGCCGCCGA-----GUGCG---CGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 102994 | 0.66 | 0.614861 |
Target: 5'- cGAcaCGGCGGCcgcCACGCGCuCCGcguGGCu -3' miRNA: 3'- aCUagGCCGCCGa--GUGCGCG-GGC---CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 74118 | 0.66 | 0.575681 |
Target: 5'- gGAcCCGGUGGUcCugGCGCCgGuGCu -3' miRNA: 3'- aCUaGGCCGCCGaGugCGCGGgCcUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 47706 | 0.66 | 0.564995 |
Target: 5'- cGcgUCGGCGGCgUCGgGgGCCuccucggCGGACa -3' miRNA: 3'- aCuaGGCCGCCG-AGUgCgCGG-------GCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 30339 | 0.66 | 0.563057 |
Target: 5'- cGG-CUGGCGGCcgcgcUCGCggcccugaaggccgGCGCgCCGGGCg -3' miRNA: 3'- aCUaGGCCGCCG-----AGUG--------------CGCG-GGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 66036 | 0.66 | 0.55629 |
Target: 5'- cGuagUCGGCGGC-CACGgccaGcCCCGGGCc -3' miRNA: 3'- aCua-GGCCGCCGaGUGCg---C-GGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 117210 | 0.66 | 0.565964 |
Target: 5'- ---aCCGGCGcGC-C-CGCuGCCUGGGCg -3' miRNA: 3'- acuaGGCCGC-CGaGuGCG-CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 115802 | 0.66 | 0.560154 |
Target: 5'- gGAagCGGaugaGGCUCACGCacacgcggugcgccaGCuuGGGCg -3' miRNA: 3'- aCUagGCCg---CCGAGUGCG---------------CGggCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 89095 | 0.66 | 0.565964 |
Target: 5'- cGGcCCgGGCGcGCUgGCGCGCgCGuGGCa -3' miRNA: 3'- aCUaGG-CCGC-CGAgUGCGCGgGC-CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 98265 | 0.66 | 0.564995 |
Target: 5'- -cGUCaGGCGGCgCGCGCguucgacGCCCGGcGCg -3' miRNA: 3'- acUAGgCCGCCGaGUGCG-------CGGGCC-UG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 30077 | 0.66 | 0.575681 |
Target: 5'- cGcgCUaGCGGCgcacccggagCGCGUGCuCCGGGCa -3' miRNA: 3'- aCuaGGcCGCCGa---------GUGCGCG-GGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 129675 | 0.66 | 0.565964 |
Target: 5'- gGA-CCGGgGGCgu-CGCGaCUCGGGCc -3' miRNA: 3'- aCUaGGCCgCCGaguGCGC-GGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 102537 | 0.66 | 0.565964 |
Target: 5'- uUGGccgCCuGCGGCccCAgGCGCCCGG-Cg -3' miRNA: 3'- -ACUa--GGcCGCCGa-GUgCGCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 2947 | 0.66 | 0.565964 |
Target: 5'- ----gCGGCcgGGCUC-CG-GCCCGGACu -3' miRNA: 3'- acuagGCCG--CCGAGuGCgCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 54232 | 0.66 | 0.555325 |
Target: 5'- aGGUCacgCGGCGcgcGCUCaugugcaGCGCGCCCuGGCg -3' miRNA: 3'- aCUAG---GCCGC---CGAG-------UGCGCGGGcCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 41155 | 0.66 | 0.565964 |
Target: 5'- ---gCCGGUaGGCUucgucCACGCgGCCCGGGu -3' miRNA: 3'- acuaGGCCG-CCGA-----GUGCG-CGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 50552 | 0.66 | 0.565964 |
Target: 5'- ---aUCGGCGcGCggaccacggUCACGCGCCUGG-Cg -3' miRNA: 3'- acuaGGCCGC-CG---------AGUGCGCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 68736 | 0.66 | 0.565964 |
Target: 5'- gGcgCCGGCGGgaagaagCGCcCGCCgGGGCg -3' miRNA: 3'- aCuaGGCCGCCga-----GUGcGCGGgCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 60258 | 0.66 | 0.55629 |
Target: 5'- gGGagCGGCGGCcgugaagAgGCGCCCGGGg -3' miRNA: 3'- aCUagGCCGCCGag-----UgCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 97167 | 0.66 | 0.565964 |
Target: 5'- cGG-CCGGCuGGgUCGCGgGCgCCGGcCg -3' miRNA: 3'- aCUaGGCCG-CCgAGUGCgCG-GGCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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