miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 2947 0.66 0.565964
Target:  5'- ----gCGGCcgGGCUC-CG-GCCCGGACu -3'
miRNA:   3'- acuagGCCG--CCGAGuGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 37353 0.66 0.575681
Target:  5'- -uAUCCgcgGGCGGUgcUCGC-CGCCCGaGGCg -3'
miRNA:   3'- acUAGG---CCGCCG--AGUGcGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 3411 0.66 0.575681
Target:  5'- ---gCCGGCgGGCUgAagaGCGCgCGGGCc -3'
miRNA:   3'- acuaGGCCG-CCGAgUg--CGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 44707 0.66 0.595221
Target:  5'- cGAUCUucaCGGCUgACGCGCgCaGGGCg -3'
miRNA:   3'- aCUAGGcc-GCCGAgUGCGCGgG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 74495 0.66 0.585436
Target:  5'- gGAUCuCGGC-GCUCuucgggGCgGCGCCgGGGCc -3'
miRNA:   3'- aCUAG-GCCGcCGAG------UG-CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 54232 0.66 0.555325
Target:  5'- aGGUCacgCGGCGcgcGCUCaugugcaGCGCGCCCuGGCg -3'
miRNA:   3'- aCUAG---GCCGC---CGAG-------UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 121080 0.66 0.575681
Target:  5'- gGcgCCGGCGGC-CGCcaGCGCCUccaGGcCg -3'
miRNA:   3'- aCuaGGCCGCCGaGUG--CGCGGG---CCuG- -5'
23761 5' -62.7 NC_005261.1 + 71404 0.66 0.575681
Target:  5'- gUGGUa-GGCGGCgUCcgGCGCggggcccgGCCCGGGCc -3'
miRNA:   3'- -ACUAggCCGCCG-AG--UGCG--------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 64876 0.66 0.585436
Target:  5'- aGAUCagCGGCGGCgggaGCGCCgGGuCc -3'
miRNA:   3'- aCUAG--GCCGCCGagugCGCGGgCCuG- -5'
23761 5' -62.7 NC_005261.1 + 117210 0.66 0.565964
Target:  5'- ---aCCGGCGcGC-C-CGCuGCCUGGGCg -3'
miRNA:   3'- acuaGGCCGC-CGaGuGCG-CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 47706 0.66 0.564995
Target:  5'- cGcgUCGGCGGCgUCGgGgGCCuccucggCGGACa -3'
miRNA:   3'- aCuaGGCCGCCG-AGUgCgCGG-------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 6441 0.66 0.55629
Target:  5'- cGGUCCGGgGGCcggcCGgGCuGCCCGcACa -3'
miRNA:   3'- aCUAGGCCgCCGa---GUgCG-CGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 66036 0.66 0.55629
Target:  5'- cGuagUCGGCGGC-CACGgccaGcCCCGGGCc -3'
miRNA:   3'- aCua-GGCCGCCGaGUGCg---C-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 36803 0.66 0.595221
Target:  5'- uUGcgCCGGcCGGCgcUACGUGCcCCGGuauGCg -3'
miRNA:   3'- -ACuaGGCC-GCCGa-GUGCGCG-GGCC---UG- -5'
23761 5' -62.7 NC_005261.1 + 68736 0.66 0.565964
Target:  5'- gGcgCCGGCGGgaagaagCGCcCGCCgGGGCg -3'
miRNA:   3'- aCuaGGCCGCCga-----GUGcGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 113529 0.66 0.575681
Target:  5'- cGAggccagCCGGCucggGGCcgUGCGCGCgCUGGACc -3'
miRNA:   3'- aCUa-----GGCCG----CCGa-GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55745 0.66 0.585436
Target:  5'- gUGcugCCGGaCGGCcucgacgCGCGCcgccGCCCGGAUc -3'
miRNA:   3'- -ACua-GGCC-GCCGa------GUGCG----CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 115802 0.66 0.560154
Target:  5'- gGAagCGGaugaGGCUCACGCacacgcggugcgccaGCuuGGGCg -3'
miRNA:   3'- aCUagGCCg---CCGAGUGCG---------------CGggCCUG- -5'
23761 5' -62.7 NC_005261.1 + 60258 0.66 0.55629
Target:  5'- gGGagCGGCGGCcgugaagAgGCGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-----UgCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 30077 0.66 0.575681
Target:  5'- cGcgCUaGCGGCgcacccggagCGCGUGCuCCGGGCa -3'
miRNA:   3'- aCuaGGcCGCCGa---------GUGCGCG-GGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.