miRNA display CGI


Results 41 - 60 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 74118 0.66 0.575681
Target:  5'- gGAcCCGGUGGUcCugGCGCCgGuGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGugCGCGGgCcUG- -5'
23761 5' -62.7 NC_005261.1 + 60258 0.66 0.55629
Target:  5'- gGGagCGGCGGCcgugaagAgGCGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-----UgCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 32495 0.66 0.608962
Target:  5'- cGGcgaCGGCGGCaUCGgcgggggguccgcgcCGCGCCCGGcCc -3'
miRNA:   3'- aCUag-GCCGCCG-AGU---------------GCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 66344 0.66 0.611911
Target:  5'- aGGUCUGcgaucuuggccagcGCGaGCUCGCGC-CCCGG-Cg -3'
miRNA:   3'- aCUAGGC--------------CGC-CGAGUGCGcGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 23216 0.66 0.595221
Target:  5'- ----gCGGCGGC-CGCGCGCaaaagCCGGuGCa -3'
miRNA:   3'- acuagGCCGCCGaGUGCGCG-----GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 121080 0.66 0.575681
Target:  5'- gGcgCCGGCGGC-CGCcaGCGCCUccaGGcCg -3'
miRNA:   3'- aCuaGGCCGCCGaGUG--CGCGGG---CCuG- -5'
23761 5' -62.7 NC_005261.1 + 71070 0.66 0.614861
Target:  5'- ---gCCGcGCGGCggGCgggGCGUCCGGGCc -3'
miRNA:   3'- acuaGGC-CGCCGagUG---CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 53498 0.66 0.614861
Target:  5'- cGcgCCaGgGGCUCGuuauCGCGCCCGaaGGCu -3'
miRNA:   3'- aCuaGGcCgCCGAGU----GCGCGGGC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 55745 0.66 0.585436
Target:  5'- gUGcugCCGGaCGGCcucgacgCGCGCcgccGCCCGGAUc -3'
miRNA:   3'- -ACua-GGCC-GCCGa------GUGCG----CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 64876 0.66 0.585436
Target:  5'- aGAUCagCGGCGGCgggaGCGCCgGGuCc -3'
miRNA:   3'- aCUAG--GCCGCCGagugCGCGGgCCuG- -5'
23761 5' -62.7 NC_005261.1 + 35705 0.66 0.595221
Target:  5'- gUGggCCGGgGGCUCGgugGCGgcCCCGGcCg -3'
miRNA:   3'- -ACuaGGCCgCCGAGUg--CGC--GGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 74495 0.66 0.585436
Target:  5'- gGAUCuCGGC-GCUCuucgggGCgGCGCCgGGGCc -3'
miRNA:   3'- aCUAG-GCCGcCGAG------UG-CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108225 0.66 0.605032
Target:  5'- cGcUCCaGCauGGCgCACGUGCCCGG-Cg -3'
miRNA:   3'- aCuAGGcCG--CCGaGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 83749 0.66 0.602087
Target:  5'- cGAggUGGCGGCgcgccacggccgggUCGCaGCGCCCGaGCa -3'
miRNA:   3'- aCUagGCCGCCG--------------AGUG-CGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 125272 0.66 0.586413
Target:  5'- -cGUCCGGgGGCcgcuggaagucaggcCGCGgGCgCCGGACc -3'
miRNA:   3'- acUAGGCCgCCGa--------------GUGCgCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 44707 0.66 0.595221
Target:  5'- cGAUCUucaCGGCUgACGCGCgCaGGGCg -3'
miRNA:   3'- aCUAGGcc-GCCGAgUGCGCGgG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 132613 0.67 0.508746
Target:  5'- cGAgccgCCaGGgGGCgCugGCGCCgaGGACg -3'
miRNA:   3'- aCUa---GG-CCgCCGaGugCGCGGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 83512 0.67 0.508746
Target:  5'- cGcgCCGGUGGaagcggCACGCGCCCu--- -3'
miRNA:   3'- aCuaGGCCGCCga----GUGCGCGGGccug -5'
23761 5' -62.7 NC_005261.1 + 26110 0.67 0.508746
Target:  5'- aGAUCCaGCGGCcggguaagCAgGCGCgCGGuACg -3'
miRNA:   3'- aCUAGGcCGCCGa-------GUgCGCGgGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 68531 0.67 0.546664
Target:  5'- gGcgCCGcCGGCgccCGCGCGCCCccugcugcgcGGGCu -3'
miRNA:   3'- aCuaGGCcGCCGa--GUGCGCGGG----------CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.