miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 73133 0.67 0.499436
Target:  5'- cGGUCCccgGGCcgGGCUCGCGCcGCCa-GGCg -3'
miRNA:   3'- aCUAGG---CCG--CCGAGUGCG-CGGgcCUG- -5'
23761 5' -62.7 NC_005261.1 + 31871 0.67 0.546664
Target:  5'- gGGcCCGGCGcCuUCGCGCGCgCCGaGGCc -3'
miRNA:   3'- aCUaGGCCGCcG-AGUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 74473 0.67 0.537091
Target:  5'- ---cCCGGC-GCg-GCGUGCCUGGGCg -3'
miRNA:   3'- acuaGGCCGcCGagUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98042 0.67 0.508746
Target:  5'- cGGUaCUGGCGGCcgCGgGCGgCgGGACc -3'
miRNA:   3'- aCUA-GGCCGCCGa-GUgCGCgGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 1905 0.67 0.507811
Target:  5'- cGcgCCGcucaggccagcgcGCGGCgCACuGCGCCgCGGGCa -3'
miRNA:   3'- aCuaGGC-------------CGCCGaGUG-CGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 26110 0.67 0.508746
Target:  5'- aGAUCCaGCGGCcggguaagCAgGCGCgCGGuACg -3'
miRNA:   3'- aCUAGGcCGCCGa-------GUgCGCGgGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 118576 0.67 0.527578
Target:  5'- cGcgCgCGGCGGCgCGCGCcgccGCCgCGGAg -3'
miRNA:   3'- aCuaG-GCCGCCGaGUGCG----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 15475 0.67 0.527578
Target:  5'- cGAcCgCGGCGGa-CACGCGCCgcucgcugCGGGCg -3'
miRNA:   3'- aCUaG-GCCGCCgaGUGCGCGG--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55680 0.67 0.527578
Target:  5'- cGAUUuucggccagcaCGGCGGC-CACGgcCGCuuGGGCg -3'
miRNA:   3'- aCUAG-----------GCCGCCGaGUGC--GCGggCCUG- -5'
23761 5' -62.7 NC_005261.1 + 84303 0.67 0.530426
Target:  5'- ---cCCGGCGGCgccgaaggcguagguCGCGUCCGGGg -3'
miRNA:   3'- acuaGGCCGCCGagu------------GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 95808 0.67 0.537091
Target:  5'- gGcgCCGGCGGgggcucgcggucCUCGCgGCGCUugUGGGCg -3'
miRNA:   3'- aCuaGGCCGCC------------GAGUG-CGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 2682 0.67 0.537091
Target:  5'- gGAcCCGGCGGCgcgccggcuUUugGCcgGCgCCGGGCc -3'
miRNA:   3'- aCUaGGCCGCCG---------AGugCG--CG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 65801 0.67 0.537091
Target:  5'- -cAUCC-GCGGgUCgGgGUGCCCGGGCg -3'
miRNA:   3'- acUAGGcCGCCgAG-UgCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 75818 0.67 0.537091
Target:  5'- cUGGUgcCCGGC-GCggcCGCGCCCGGGg -3'
miRNA:   3'- -ACUA--GGCCGcCGaguGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 106767 0.67 0.545704
Target:  5'- cGAgcuugCCGGCGGC-CAgcccagcgccgucUGCGCCCGcACc -3'
miRNA:   3'- aCUa----GGCCGCCGaGU-------------GCGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 76148 0.67 0.546664
Target:  5'- aGGUCgUGGCGGCgCACGaCGCCgUGGcGCu -3'
miRNA:   3'- aCUAG-GCCGCCGaGUGC-GCGG-GCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 48303 0.67 0.546664
Target:  5'- cGAggccUCgGGgGGCgCGuCGgGCCCGGGCu -3'
miRNA:   3'- aCU----AGgCCgCCGaGU-GCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 132613 0.67 0.508746
Target:  5'- cGAgccgCCaGGgGGCgCugGCGCCgaGGACg -3'
miRNA:   3'- aCUa---GG-CCgCCGaGugCGCGGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 131763 0.67 0.546664
Target:  5'- cGG-CCGGCgcGGCggGCGCGCCgcUGGGCc -3'
miRNA:   3'- aCUaGGCCG--CCGagUGCGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 83512 0.67 0.508746
Target:  5'- cGcgCCGGUGGaagcggCACGCGCCCu--- -3'
miRNA:   3'- aCuaGGCCGCCga----GUGCGCGGGccug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.