miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 84303 0.67 0.530426
Target:  5'- ---cCCGGCGGCgccgaaggcguagguCGCGUCCGGGg -3'
miRNA:   3'- acuaGGCCGCCGagu------------GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 76431 0.67 0.527578
Target:  5'- aGcgCCGGCgccauGGCggACGCGCCCGa-- -3'
miRNA:   3'- aCuaGGCCG-----CCGagUGCGCGGGCcug -5'
23761 5' -62.7 NC_005261.1 + 118576 0.67 0.527578
Target:  5'- cGcgCgCGGCGGCgCGCGCcgccGCCgCGGAg -3'
miRNA:   3'- aCuaG-GCCGCCGaGUGCG----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 59121 0.67 0.546664
Target:  5'- cGAgcuccCCGGCcaccgacucaGGCcgGCGCGcCCCGGGCg -3'
miRNA:   3'- aCUa----GGCCG----------CCGagUGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 65801 0.67 0.537091
Target:  5'- -cAUCC-GCGGgUCgGgGUGCCCGGGCg -3'
miRNA:   3'- acUAGGcCGCCgAG-UgCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 1905 0.67 0.507811
Target:  5'- cGcgCCGcucaggccagcgcGCGGCgCACuGCGCCgCGGGCa -3'
miRNA:   3'- aCuaGGC-------------CGCCGaGUG-CGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 26110 0.67 0.508746
Target:  5'- aGAUCCaGCGGCcggguaagCAgGCGCgCGGuACg -3'
miRNA:   3'- aCUAGGcCGCCGa-------GUgCGCGgGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 15475 0.67 0.527578
Target:  5'- cGAcCgCGGCGGa-CACGCGCCgcucgcugCGGGCg -3'
miRNA:   3'- aCUaG-GCCGCCgaGUGCGCGG--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55680 0.67 0.527578
Target:  5'- cGAUUuucggccagcaCGGCGGC-CACGgcCGCuuGGGCg -3'
miRNA:   3'- aCUAG-----------GCCGCCGaGUGC--GCGggCCUG- -5'
23761 5' -62.7 NC_005261.1 + 86084 0.68 0.445309
Target:  5'- aUGAugcUCCGcGCGuuCUCGuCgGCGCCCGGGCg -3'
miRNA:   3'- -ACU---AGGC-CGCc-GAGU-G-CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 103105 0.68 0.445309
Target:  5'- ---cCCGGCcagcgcccccGGCgccaGCGCGCCCGGGu -3'
miRNA:   3'- acuaGGCCG----------CCGag--UGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 31342 0.68 0.462999
Target:  5'- cGcgCCGcuGCGGCggCGCGUGgCCUGGAUg -3'
miRNA:   3'- aCuaGGC--CGCCGa-GUGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 50820 0.68 0.462999
Target:  5'- gGGcUCCGcGCGGCUuggcgccgcgagCugGCGCCUGuGGCu -3'
miRNA:   3'- aCU-AGGC-CGCCGA------------GugCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 84656 0.68 0.454107
Target:  5'- ---cCCGGCuGGCgccgCcCGCGCCCGcGGCc -3'
miRNA:   3'- acuaGGCCG-CCGa---GuGCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 97963 0.68 0.471981
Target:  5'- gGAggUGGCGGCggaGCgGUGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-UG-CGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 93259 0.68 0.471981
Target:  5'- cGA-CCGGCGcGCcagCGCGCGCCUccaacaccggcaGGAUg -3'
miRNA:   3'- aCUaGGCCGC-CGa--GUGCGCGGG------------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 111747 0.68 0.480139
Target:  5'- gUGAagugCgGGCaGCUCgugcaccugcgcuGCGCGCCCGGGg -3'
miRNA:   3'- -ACUa---GgCCGcCGAG-------------UGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 2127 0.68 0.480139
Target:  5'- cGcgCCGaGCGcGCUCacguccgGCGCGCCCguccaGGACc -3'
miRNA:   3'- aCuaGGC-CGC-CGAG-------UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 127887 0.68 0.490203
Target:  5'- cGcgCCGGC-GCcCGuCGgGCCCGGGCc -3'
miRNA:   3'- aCuaGGCCGcCGaGU-GCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 136607 0.68 0.490203
Target:  5'- aGcgUgGaGCGGCgcgCGCGCGCCgaGGGCg -3'
miRNA:   3'- aCuaGgC-CGCCGa--GUGCGCGGg-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.