miRNA display CGI


Results 21 - 40 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 98533 0.73 0.226661
Target:  5'- aGAUCCGGcCGGUagGCuGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGCC-GCCGagUG-CGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 54366 0.72 0.291809
Target:  5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 6221 0.72 0.291809
Target:  5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3'
miRNA:   3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 118119 0.72 0.285326
Target:  5'- cUGcgCCGcCGGCUCGCGcCGCUCGGcCg -3'
miRNA:   3'- -ACuaGGCcGCCGAGUGC-GCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 129577 0.72 0.278956
Target:  5'- gGAggaGGCGGC-CGCGCGCCgCgGGACa -3'
miRNA:   3'- aCUaggCCGCCGaGUGCGCGG-G-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 70814 0.72 0.278956
Target:  5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3'
miRNA:   3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 29871 0.72 0.278956
Target:  5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3'
miRNA:   3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 93571 0.72 0.272701
Target:  5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3'
miRNA:   3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 86975 0.72 0.272701
Target:  5'- -cGUCCGGCGGCagCACgGCGCCCucguGGCc -3'
miRNA:   3'- acUAGGCCGCCGa-GUG-CGCGGGc---CUG- -5'
23761 5' -62.7 NC_005261.1 + 43432 0.72 0.272701
Target:  5'- ---gCCGGCggggagcuGGCUCG-GCGCCUGGACg -3'
miRNA:   3'- acuaGGCCG--------CCGAGUgCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 22750 0.72 0.266558
Target:  5'- cGGggCGGCGGCggccCACGCGUCUGGGg -3'
miRNA:   3'- aCUagGCCGCCGa---GUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 106543 0.72 0.260528
Target:  5'- ---cUCGGCGGCggcCGCGUCCGGGCc -3'
miRNA:   3'- acuaGGCCGCCGaguGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29393 0.72 0.260528
Target:  5'- aGAUCCgcgaGGCGGC-CGCGCGCUaCGcGGCg -3'
miRNA:   3'- aCUAGG----CCGCCGaGUGCGCGG-GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 124256 0.71 0.318893
Target:  5'- gGcgCCGcGCGGCgccgccCGCGCGCCCcGGCc -3'
miRNA:   3'- aCuaGGC-CGCCGa-----GUGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 71595 0.71 0.318193
Target:  5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3'
miRNA:   3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 3795 0.71 0.311949
Target:  5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3'
miRNA:   3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 88822 0.71 0.311949
Target:  5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3'
miRNA:   3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 51876 0.71 0.311949
Target:  5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3'
miRNA:   3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 5138 0.71 0.30512
Target:  5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3'
miRNA:   3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5'
23761 5' -62.7 NC_005261.1 + 35456 0.71 0.325952
Target:  5'- gGGUCUagGcGCGGCgcgCGCGCGuCCCGGGg -3'
miRNA:   3'- aCUAGG--C-CGCCGa--GUGCGC-GGGCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.