miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 35456 0.71 0.325952
Target:  5'- gGGUCUagGcGCGGCgcgCGCGCGuCCCGGGg -3'
miRNA:   3'- aCUAGG--C-CGCCGa--GUGCGC-GGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 124256 0.71 0.318893
Target:  5'- gGcgCCGcGCGGCgccgccCGCGCGCCCcGGCc -3'
miRNA:   3'- aCuaGGC-CGCCGa-----GUGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 83637 0.71 0.301079
Target:  5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3'
miRNA:   3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 5138 0.71 0.30512
Target:  5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3'
miRNA:   3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5'
23761 5' -62.7 NC_005261.1 + 51876 0.71 0.311949
Target:  5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3'
miRNA:   3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 88822 0.71 0.311949
Target:  5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3'
miRNA:   3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 3795 0.71 0.311949
Target:  5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3'
miRNA:   3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71595 0.71 0.318193
Target:  5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3'
miRNA:   3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 59504 0.7 0.370718
Target:  5'- ----gCGGCGGCggucgcaCGCGCGCCCuGGAg -3'
miRNA:   3'- acuagGCCGCCGa------GUGCGCGGG-CCUg -5'
23761 5' -62.7 NC_005261.1 + 113574 0.7 0.370718
Target:  5'- gUGGU-CGGUGGCcgccgCGCugggcgaccucGCGCCCGGGCa -3'
miRNA:   3'- -ACUAgGCCGCCGa----GUG-----------CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 19164 0.7 0.370718
Target:  5'- ---gCCGGCGGaUCACGCGaagcagcugCCGGGCg -3'
miRNA:   3'- acuaGGCCGCCgAGUGCGCg--------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 93472 0.7 0.362972
Target:  5'- cGGUgCCGG-GGCgCGCGuCGCCCGcGGCg -3'
miRNA:   3'- aCUA-GGCCgCCGaGUGC-GCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 55213 0.7 0.362972
Target:  5'- gGAUCCGGCGGCcCGagGCGgCgaGGGCg -3'
miRNA:   3'- aCUAGGCCGCCGaGUg-CGCgGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 73942 0.7 0.355339
Target:  5'- cUGcUCCGGCuugcagacGCgggGCGCGCCCGGGCc -3'
miRNA:   3'- -ACuAGGCCGc-------CGag-UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 102949 0.7 0.34782
Target:  5'- cGcUgCGGCGGCggccgCGgGCGCCgCGGGCu -3'
miRNA:   3'- aCuAgGCCGCCGa----GUgCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108472 0.7 0.34782
Target:  5'- gGAucUCCGcGuCGGCgcgCACGCGCgCCGcGACg -3'
miRNA:   3'- aCU--AGGC-C-GCCGa--GUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 26647 0.7 0.34782
Target:  5'- aGGUCCuGCcccugGGC-CACaCGCCCGGACg -3'
miRNA:   3'- aCUAGGcCG-----CCGaGUGcGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 17196 0.7 0.34782
Target:  5'- ----gCGGCGGCgagcaGCGCGCCCagcacGGACa -3'
miRNA:   3'- acuagGCCGCCGag---UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 4080 0.7 0.340416
Target:  5'- cGA-CCGGCGGCagcggcgccgUCACGCuCCCGGu- -3'
miRNA:   3'- aCUaGGCCGCCG----------AGUGCGcGGGCCug -5'
23761 5' -62.7 NC_005261.1 + 64179 0.7 0.378575
Target:  5'- gUGGUCCGGgcaGGCgaaaagCGCGUGCaCCGG-Cg -3'
miRNA:   3'- -ACUAGGCCg--CCGa-----GUGCGCG-GGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.