miRNA display CGI


Results 61 - 80 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 4080 0.7 0.340416
Target:  5'- cGA-CCGGCGGCagcggcgccgUCACGCuCCCGGu- -3'
miRNA:   3'- aCUaGGCCGCCG----------AGUGCGcGGGCCug -5'
23761 5' -62.7 NC_005261.1 + 17196 0.7 0.34782
Target:  5'- ----gCGGCGGCgagcaGCGCGCCCagcacGGACa -3'
miRNA:   3'- acuagGCCGCCGag---UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 26647 0.7 0.34782
Target:  5'- aGGUCCuGCcccugGGC-CACaCGCCCGGACg -3'
miRNA:   3'- aCUAGGcCG-----CCGaGUGcGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108472 0.7 0.34782
Target:  5'- gGAucUCCGcGuCGGCgcgCACGCGCgCCGcGACg -3'
miRNA:   3'- aCU--AGGC-C-GCCGa--GUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 102949 0.7 0.34782
Target:  5'- cGcUgCGGCGGCggccgCGgGCGCCgCGGGCu -3'
miRNA:   3'- aCuAgGCCGCCGa----GUgCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 73942 0.7 0.355339
Target:  5'- cUGcUCCGGCuugcagacGCgggGCGCGCCCGGGCc -3'
miRNA:   3'- -ACuAGGCCGc-------CGag-UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55213 0.7 0.362972
Target:  5'- gGAUCCGGCGGCcCGagGCGgCgaGGGCg -3'
miRNA:   3'- aCUAGGCCGCCGaGUg-CGCgGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 12318 0.69 0.411103
Target:  5'- cGuagCCGGCGGg-CGCGCGCuuGGcCg -3'
miRNA:   3'- aCua-GGCCGCCgaGUGCGCGggCCuG- -5'
23761 5' -62.7 NC_005261.1 + 59682 0.69 0.411103
Target:  5'- cGAagCCGcccuCGGCcagCACGCGCuCCGGGCa -3'
miRNA:   3'- aCUa-GGCc---GCCGa--GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98720 0.69 0.411103
Target:  5'- gGGUCCGGCcuugGGggCACGCGgCCgcgCGGGCg -3'
miRNA:   3'- aCUAGGCCG----CCgaGUGCGC-GG---GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4401 0.69 0.411103
Target:  5'- cGGg-CGGCGGCg-GCGCGCugCCGGGCc -3'
miRNA:   3'- aCUagGCCGCCGagUGCGCG--GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 74948 0.69 0.419502
Target:  5'- gGcgCgGGCGcGCUCgGCGCGCUCGaGGCc -3'
miRNA:   3'- aCuaGgCCGC-CGAG-UGCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 14530 0.69 0.402809
Target:  5'- ---cCCGGCGGUggCGCGgcCGCCCGG-Cg -3'
miRNA:   3'- acuaGGCCGCCGa-GUGC--GCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 2994 0.69 0.402809
Target:  5'- cGGcCUGGCGGCcCG-GCGCCgGGGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGUgCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 51185 0.69 0.402809
Target:  5'- cGcgCUGGCGacGCUCgccACGCcCCCGGGCg -3'
miRNA:   3'- aCuaGGCCGC--CGAG---UGCGcGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 23177 0.69 0.402809
Target:  5'- cGcgCCGGgGGCgacagcgaGCGCGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCgCCGag------UGCGCGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 105078 0.69 0.394622
Target:  5'- gGGUCCGcCGaCUC-CGCGcCCCGGACc -3'
miRNA:   3'- aCUAGGCcGCcGAGuGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 130464 0.69 0.394622
Target:  5'- cUGGcCCGaGCGGCUCgcgGCGUGCCUcGGCg -3'
miRNA:   3'- -ACUaGGC-CGCCGAG---UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 72950 0.69 0.394622
Target:  5'- gGcgCCGGCaccGGCUCGCGCccgccGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCG---CCGAGUGCG-----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 3740 0.69 0.427149
Target:  5'- cGcgCCGGCGGCgCACcgcgccgccucuaGCGCCuCGcGGCa -3'
miRNA:   3'- aCuaGGCCGCCGaGUG-------------CGCGG-GC-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.