miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 72950 0.69 0.394622
Target:  5'- gGcgCCGGCaccGGCUCGCGCccgccGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCG---CCGAGUGCG-----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 130464 0.69 0.394622
Target:  5'- cUGGcCCGaGCGGCUCgcgGCGUGCCUcGGCg -3'
miRNA:   3'- -ACUaGGC-CGCCGAG---UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 105078 0.69 0.394622
Target:  5'- gGGUCCGcCGaCUC-CGCGcCCCGGACc -3'
miRNA:   3'- aCUAGGCcGCcGAGuGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 23177 0.69 0.402809
Target:  5'- cGcgCCGGgGGCgacagcgaGCGCGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCgCCGag------UGCGCGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 51185 0.69 0.402809
Target:  5'- cGcgCUGGCGacGCUCgccACGCcCCCGGGCg -3'
miRNA:   3'- aCuaGGCCGC--CGAG---UGCGcGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 2994 0.69 0.402809
Target:  5'- cGGcCUGGCGGCcCG-GCGCCgGGGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGUgCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 14530 0.69 0.402809
Target:  5'- ---cCCGGCGGUggCGCGgcCGCCCGG-Cg -3'
miRNA:   3'- acuaGGCCGCCGa-GUGC--GCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 12318 0.69 0.411103
Target:  5'- cGuagCCGGCGGg-CGCGCGCuuGGcCg -3'
miRNA:   3'- aCua-GGCCGCCgaGUGCGCGggCCuG- -5'
23761 5' -62.7 NC_005261.1 + 99016 0.68 0.445309
Target:  5'- cGAg-CGGCGGCgcggcggCGCGCGCCCa--- -3'
miRNA:   3'- aCUagGCCGCCGa------GUGCGCGGGccug -5'
23761 5' -62.7 NC_005261.1 + 86084 0.68 0.445309
Target:  5'- aUGAugcUCCGcGCGuuCUCGuCgGCGCCCGGGCg -3'
miRNA:   3'- -ACU---AGGC-CGCc-GAGU-G-CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 103105 0.68 0.445309
Target:  5'- ---cCCGGCcagcgcccccGGCgccaGCGCGCCCGGGu -3'
miRNA:   3'- acuaGGCCG----------CCGag--UGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 84656 0.68 0.454107
Target:  5'- ---cCCGGCuGGCgccgCcCGCGCCCGcGGCc -3'
miRNA:   3'- acuaGGCCG-CCGa---GuGCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 50820 0.68 0.462999
Target:  5'- gGGcUCCGcGCGGCUuggcgccgcgagCugGCGCCUGuGGCu -3'
miRNA:   3'- aCU-AGGC-CGCCGA------------GugCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 78048 0.68 0.445309
Target:  5'- ---gCCGGUGG-UCGCGgGCCCGGcCc -3'
miRNA:   3'- acuaGGCCGCCgAGUGCgCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 63007 0.68 0.445309
Target:  5'- ---cUCGGCGGC-CGCGCccGCgCGGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCG--CGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 72526 0.68 0.445309
Target:  5'- --cUCCuuGGCGGCUCGCuGCGCggcaggggaCGGGCg -3'
miRNA:   3'- acuAGG--CCGCCGAGUG-CGCGg--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 68148 0.68 0.445309
Target:  5'- cGcgCCguGGcCGGCUaCACGCGCgCGGAg -3'
miRNA:   3'- aCuaGG--CC-GCCGA-GUGCGCGgGCCUg -5'
23761 5' -62.7 NC_005261.1 + 55173 0.68 0.445309
Target:  5'- ---gCCGGCGGCUCGCGgGgC-GGAUc -3'
miRNA:   3'- acuaGGCCGCCGAGUGCgCgGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 16104 0.68 0.445309
Target:  5'- ---aCCGGCGGCggccacgCACGCGaucaCCGcGGCc -3'
miRNA:   3'- acuaGGCCGCCGa------GUGCGCg---GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 98472 0.68 0.462999
Target:  5'- cGA-CgGGCGGCcguccucCGCGgGCUCGGGCg -3'
miRNA:   3'- aCUaGgCCGCCGa------GUGCgCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.