miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 35456 0.71 0.325952
Target:  5'- gGGUCUagGcGCGGCgcgCGCGCGuCCCGGGg -3'
miRNA:   3'- aCUAGG--C-CGCCGa--GUGCGC-GGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 92800 0.71 0.325952
Target:  5'- gGGUCCGGUcGC-CGgGCGCgCGGGCg -3'
miRNA:   3'- aCUAGGCCGcCGaGUgCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 93755 0.71 0.325952
Target:  5'- ---cUCGGCGGCcCGCGCGCgCGcGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 98561 0.71 0.325952
Target:  5'- -aAUCCGGCGGgcggccgucCUcCGCGgGCUCGGGCg -3'
miRNA:   3'- acUAGGCCGCC---------GA-GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 104273 0.71 0.325952
Target:  5'- cGGUCuCGGCGGCUgCGCGgGCCuCGcaGGCc -3'
miRNA:   3'- aCUAG-GCCGCCGA-GUGCgCGG-GC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 78558 0.71 0.325952
Target:  5'- cGAUCC----GCUCGCGCGCCgGGACc -3'
miRNA:   3'- aCUAGGccgcCGAGUGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108284 0.71 0.332404
Target:  5'- cUGGUCCGGCGuugcGCUCGCcugcacgGCGuCCCaGACg -3'
miRNA:   3'- -ACUAGGCCGC----CGAGUG-------CGC-GGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 12063 0.71 0.333126
Target:  5'- ---aCCGGCGGUgcggcagcggcgUC-CGCGCCgGGGCg -3'
miRNA:   3'- acuaGGCCGCCG------------AGuGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29521 0.7 0.337486
Target:  5'- aUGGcCUGGCugcagagcgcgaaGCUCGCGgGCCCGGACc -3'
miRNA:   3'- -ACUaGGCCGc------------CGAGUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4080 0.7 0.340416
Target:  5'- cGA-CCGGCGGCagcggcgccgUCACGCuCCCGGu- -3'
miRNA:   3'- aCUaGGCCGCCG----------AGUGCGcGGGCCug -5'
23761 5' -62.7 NC_005261.1 + 17196 0.7 0.34782
Target:  5'- ----gCGGCGGCgagcaGCGCGCCCagcacGGACa -3'
miRNA:   3'- acuagGCCGCCGag---UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 26647 0.7 0.34782
Target:  5'- aGGUCCuGCcccugGGC-CACaCGCCCGGACg -3'
miRNA:   3'- aCUAGGcCG-----CCGaGUGcGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108472 0.7 0.34782
Target:  5'- gGAucUCCGcGuCGGCgcgCACGCGCgCCGcGACg -3'
miRNA:   3'- aCU--AGGC-C-GCCGa--GUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 102949 0.7 0.34782
Target:  5'- cGcUgCGGCGGCggccgCGgGCGCCgCGGGCu -3'
miRNA:   3'- aCuAgGCCGCCGa----GUgCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 73942 0.7 0.355339
Target:  5'- cUGcUCCGGCuugcagacGCgggGCGCGCCCGGGCc -3'
miRNA:   3'- -ACuAGGCCGc-------CGag-UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55213 0.7 0.362972
Target:  5'- gGAUCCGGCGGCcCGagGCGgCgaGGGCg -3'
miRNA:   3'- aCUAGGCCGCCGaGUg-CGCgGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 93472 0.7 0.362972
Target:  5'- cGGUgCCGG-GGCgCGCGuCGCCCGcGGCg -3'
miRNA:   3'- aCUA-GGCCgCCGaGUGC-GCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 19164 0.7 0.370718
Target:  5'- ---gCCGGCGGaUCACGCGaagcagcugCCGGGCg -3'
miRNA:   3'- acuaGGCCGCCgAGUGCGCg--------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 113574 0.7 0.370718
Target:  5'- gUGGU-CGGUGGCcgccgCGCugggcgaccucGCGCCCGGGCa -3'
miRNA:   3'- -ACUAgGCCGCCGa----GUG-----------CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 59504 0.7 0.370718
Target:  5'- ----gCGGCGGCggucgcaCGCGCGCCCuGGAg -3'
miRNA:   3'- acuagGCCGCCGa------GUGCGCGGG-CCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.