miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 3740 0.69 0.427149
Target:  5'- cGcgCCGGCGGCgCACcgcgccgccucuaGCGCCuCGcGGCa -3'
miRNA:   3'- aCuaGGCCGCCGaGUG-------------CGCGG-GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 119053 0.69 0.427149
Target:  5'- cGcgCCcGCGGC-CGCGCgugugcuuucgugGCCCGGGCc -3'
miRNA:   3'- aCuaGGcCGCCGaGUGCG-------------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 112134 0.69 0.428004
Target:  5'- ---aCCGGCaGCUaguCGUGCCCGcGACg -3'
miRNA:   3'- acuaGGCCGcCGAgu-GCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 132366 0.69 0.436607
Target:  5'- ----gCGGCGcGCUCGcCGCGCUCGcGGCg -3'
miRNA:   3'- acuagGCCGC-CGAGU-GCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 104303 0.69 0.436607
Target:  5'- ---cCCGcGCGcGCUCAaagaGCGCgCGGACg -3'
miRNA:   3'- acuaGGC-CGC-CGAGUg---CGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 11923 0.69 0.436607
Target:  5'- cGG-CCGGCGGCUgcggcggccCGCGCcgcggcggcucGCCCGGcGCg -3'
miRNA:   3'- aCUaGGCCGCCGA---------GUGCG-----------CGGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 5728 0.69 0.436607
Target:  5'- aGAggCCGGCGGgagaaGCGCGCgCGGAa -3'
miRNA:   3'- aCUa-GGCCGCCgag--UGCGCGgGCCUg -5'
23761 5' -62.7 NC_005261.1 + 97895 0.69 0.436607
Target:  5'- cGggCCGGCGGaccgUCugG-GCgCCGGGCg -3'
miRNA:   3'- aCuaGGCCGCCg---AGugCgCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 122360 0.68 0.444435
Target:  5'- cGG-CC-GCGGCUCGCGCGgCCCcaccgcggccuggGGGCg -3'
miRNA:   3'- aCUaGGcCGCCGAGUGCGC-GGG-------------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 103105 0.68 0.445309
Target:  5'- ---cCCGGCcagcgcccccGGCgccaGCGCGCCCGGGu -3'
miRNA:   3'- acuaGGCCG----------CCGag--UGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 86084 0.68 0.445309
Target:  5'- aUGAugcUCCGcGCGuuCUCGuCgGCGCCCGGGCg -3'
miRNA:   3'- -ACU---AGGC-CGCc-GAGU-G-CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 99016 0.68 0.445309
Target:  5'- cGAg-CGGCGGCgcggcggCGCGCGCCCa--- -3'
miRNA:   3'- aCUagGCCGCCGa------GUGCGCGGGccug -5'
23761 5' -62.7 NC_005261.1 + 78048 0.68 0.445309
Target:  5'- ---gCCGGUGG-UCGCGgGCCCGGcCc -3'
miRNA:   3'- acuaGGCCGCCgAGUGCgCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 63007 0.68 0.445309
Target:  5'- ---cUCGGCGGC-CGCGCccGCgCGGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCG--CGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 72526 0.68 0.445309
Target:  5'- --cUCCuuGGCGGCUCGCuGCGCggcaggggaCGGGCg -3'
miRNA:   3'- acuAGG--CCGCCGAGUG-CGCGg--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 68148 0.68 0.445309
Target:  5'- cGcgCCguGGcCGGCUaCACGCGCgCGGAg -3'
miRNA:   3'- aCuaGG--CC-GCCGA-GUGCGCGgGCCUg -5'
23761 5' -62.7 NC_005261.1 + 55173 0.68 0.445309
Target:  5'- ---gCCGGCGGCUCGCGgGgC-GGAUc -3'
miRNA:   3'- acuaGGCCGCCGAGUGCgCgGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 16104 0.68 0.445309
Target:  5'- ---aCCGGCGGCggccacgCACGCGaucaCCGcGGCc -3'
miRNA:   3'- acuaGGCCGCCGa------GUGCGCg---GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 84656 0.68 0.454107
Target:  5'- ---cCCGGCuGGCgccgCcCGCGCCCGcGGCc -3'
miRNA:   3'- acuaGGCCG-CCGa---GuGCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 98472 0.68 0.462999
Target:  5'- cGA-CgGGCGGCcguccucCGCGgGCUCGGGCg -3'
miRNA:   3'- aCUaGgCCGCCGa------GUGCgCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.