miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 36803 0.66 0.595221
Target:  5'- uUGcgCCGGcCGGCgcUACGUGCcCCGGuauGCg -3'
miRNA:   3'- -ACuaGGCC-GCCGa-GUGCGCG-GGCC---UG- -5'
23761 5' -62.7 NC_005261.1 + 110427 0.66 0.594241
Target:  5'- aUGAUCC-GCuGC-CACGCGUucccgcaCCGGGCg -3'
miRNA:   3'- -ACUAGGcCGcCGaGUGCGCG-------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 21737 0.66 0.593262
Target:  5'- cGAUCgacacGCGGCUgcugcgccuggaGCGCGCgCCGGGCg -3'
miRNA:   3'- aCUAGgc---CGCCGAg-----------UGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 125272 0.66 0.586413
Target:  5'- -cGUCCGGgGGCcgcuggaagucaggcCGCGgGCgCCGGACc -3'
miRNA:   3'- acUAGGCCgCCGa--------------GUGCgCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4966 0.66 0.585436
Target:  5'- ---cCCGGCcgcGGCguccUCugGgGCCCGGAg -3'
miRNA:   3'- acuaGGCCG---CCG----AGugCgCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 64876 0.66 0.585436
Target:  5'- aGAUCagCGGCGGCgggaGCGCCgGGuCc -3'
miRNA:   3'- aCUAG--GCCGCCGagugCGCGGgCCuG- -5'
23761 5' -62.7 NC_005261.1 + 55745 0.66 0.585436
Target:  5'- gUGcugCCGGaCGGCcucgacgCGCGCcgccGCCCGGAUc -3'
miRNA:   3'- -ACua-GGCC-GCCGa------GUGCG----CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 16269 0.66 0.585436
Target:  5'- gGggCCGGgcuuCGGCUCGCccggggggGCGCCguCGGGCc -3'
miRNA:   3'- aCuaGGCC----GCCGAGUG--------CGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 74495 0.66 0.585436
Target:  5'- gGAUCuCGGC-GCUCuucgggGCgGCGCCgGGGCc -3'
miRNA:   3'- aCUAG-GCCGcCGAG------UG-CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 30077 0.66 0.575681
Target:  5'- cGcgCUaGCGGCgcacccggagCGCGUGCuCCGGGCa -3'
miRNA:   3'- aCuaGGcCGCCGa---------GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 37353 0.66 0.575681
Target:  5'- -uAUCCgcgGGCGGUgcUCGC-CGCCCGaGGCg -3'
miRNA:   3'- acUAGG---CCGCCG--AGUGcGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 92322 0.66 0.575681
Target:  5'- cGGUCCGcGCGGCccaucCGCGgGCcaCCGGuCa -3'
miRNA:   3'- aCUAGGC-CGCCGa----GUGCgCG--GGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 88034 0.66 0.575681
Target:  5'- cGGUgCCugggGGCGGUccagUCACGCGCCUGcGCc -3'
miRNA:   3'- aCUA-GG----CCGCCG----AGUGCGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 121080 0.66 0.575681
Target:  5'- gGcgCCGGCGGC-CGCcaGCGCCUccaGGcCg -3'
miRNA:   3'- aCuaGGCCGCCGaGUG--CGCGGG---CCuG- -5'
23761 5' -62.7 NC_005261.1 + 74118 0.66 0.575681
Target:  5'- gGAcCCGGUGGUcCugGCGCCgGuGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGugCGCGGgCcUG- -5'
23761 5' -62.7 NC_005261.1 + 113529 0.66 0.575681
Target:  5'- cGAggccagCCGGCucggGGCcgUGCGCGCgCUGGACc -3'
miRNA:   3'- aCUa-----GGCCG----CCGa-GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71404 0.66 0.575681
Target:  5'- gUGGUa-GGCGGCgUCcgGCGCggggcccgGCCCGGGCc -3'
miRNA:   3'- -ACUAggCCGCCG-AG--UGCG--------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 3411 0.66 0.575681
Target:  5'- ---gCCGGCgGGCUgAagaGCGCgCGGGCc -3'
miRNA:   3'- acuaGGCCG-CCGAgUg--CGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 50552 0.66 0.565964
Target:  5'- ---aUCGGCGcGCggaccacggUCACGCGCCUGG-Cg -3'
miRNA:   3'- acuaGGCCGC-CG---------AGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 117210 0.66 0.565964
Target:  5'- ---aCCGGCGcGC-C-CGCuGCCUGGGCg -3'
miRNA:   3'- acuaGGCCGC-CGaGuGCG-CGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.