miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 89095 0.66 0.565964
Target:  5'- cGGcCCgGGCGcGCUgGCGCGCgCGuGGCa -3'
miRNA:   3'- aCUaGG-CCGC-CGAgUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 102537 0.66 0.565964
Target:  5'- uUGGccgCCuGCGGCccCAgGCGCCCGG-Cg -3'
miRNA:   3'- -ACUa--GGcCGCCGa-GUgCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 50552 0.66 0.565964
Target:  5'- ---aUCGGCGcGCggaccacggUCACGCGCCUGG-Cg -3'
miRNA:   3'- acuaGGCCGC-CG---------AGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 117210 0.66 0.565964
Target:  5'- ---aCCGGCGcGC-C-CGCuGCCUGGGCg -3'
miRNA:   3'- acuaGGCCGC-CGaGuGCG-CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 41155 0.66 0.565964
Target:  5'- ---gCCGGUaGGCUucgucCACGCgGCCCGGGu -3'
miRNA:   3'- acuaGGCCG-CCGA-----GUGCG-CGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 31125 0.66 0.565964
Target:  5'- ----aCGGCGGCUuccgcCGCGUgccGCCCGGGg -3'
miRNA:   3'- acuagGCCGCCGA-----GUGCG---CGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 2947 0.66 0.565964
Target:  5'- ----gCGGCcgGGCUC-CG-GCCCGGACu -3'
miRNA:   3'- acuagGCCG--CCGAGuGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 97167 0.66 0.565964
Target:  5'- cGG-CCGGCuGGgUCGCGgGCgCCGGcCg -3'
miRNA:   3'- aCUaGGCCG-CCgAGUGCgCG-GGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 47706 0.66 0.564995
Target:  5'- cGcgUCGGCGGCgUCGgGgGCCuccucggCGGACa -3'
miRNA:   3'- aCuaGGCCGCCG-AGUgCgCGG-------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98265 0.66 0.564995
Target:  5'- -cGUCaGGCGGCgCGCGCguucgacGCCCGGcGCg -3'
miRNA:   3'- acUAGgCCGCCGaGUGCG-------CGGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 30339 0.66 0.563057
Target:  5'- cGG-CUGGCGGCcgcgcUCGCggcccugaaggccgGCGCgCCGGGCg -3'
miRNA:   3'- aCUaGGCCGCCG-----AGUG--------------CGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 115802 0.66 0.560154
Target:  5'- gGAagCGGaugaGGCUCACGCacacgcggugcgccaGCuuGGGCg -3'
miRNA:   3'- aCUagGCCg---CCGAGUGCG---------------CGggCCUG- -5'
23761 5' -62.7 NC_005261.1 + 60258 0.66 0.55629
Target:  5'- gGGagCGGCGGCcgugaagAgGCGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-----UgCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 6441 0.66 0.55629
Target:  5'- cGGUCCGGgGGCcggcCGgGCuGCCCGcACa -3'
miRNA:   3'- aCUAGGCCgCCGa---GUgCG-CGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 66036 0.66 0.55629
Target:  5'- cGuagUCGGCGGC-CACGgccaGcCCCGGGCc -3'
miRNA:   3'- aCua-GGCCGCCGaGUGCg---C-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 54232 0.66 0.555325
Target:  5'- aGGUCacgCGGCGcgcGCUCaugugcaGCGCGCCCuGGCg -3'
miRNA:   3'- aCUAG---GCCGC---CGAG-------UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 31871 0.67 0.546664
Target:  5'- gGGcCCGGCGcCuUCGCGCGCgCCGaGGCc -3'
miRNA:   3'- aCUaGGCCGCcG-AGUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 131763 0.67 0.546664
Target:  5'- cGG-CCGGCgcGGCggGCGCGCCgcUGGGCc -3'
miRNA:   3'- aCUaGGCCG--CCGagUGCGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 76148 0.67 0.546664
Target:  5'- aGGUCgUGGCGGCgCACGaCGCCgUGGcGCu -3'
miRNA:   3'- aCUAG-GCCGCCGaGUGC-GCGG-GCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 68531 0.67 0.546664
Target:  5'- gGcgCCGcCGGCgccCGCGCGCCCccugcugcgcGGGCu -3'
miRNA:   3'- aCuaGGCcGCCGa--GUGCGCGGG----------CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.