miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 1306 0.79 0.098283
Target:  5'- cGucgCCGGCGGCggCACGCGCuCCgGGACg -3'
miRNA:   3'- aCua-GGCCGCCGa-GUGCGCG-GG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 1905 0.67 0.507811
Target:  5'- cGcgCCGcucaggccagcgcGCGGCgCACuGCGCCgCGGGCa -3'
miRNA:   3'- aCuaGGC-------------CGCCGaGUG-CGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 2127 0.68 0.480139
Target:  5'- cGcgCCGaGCGcGCUCacguccgGCGCGCCCguccaGGACc -3'
miRNA:   3'- aCuaGGC-CGC-CGAG-------UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 2391 0.75 0.187379
Target:  5'- cGcgCUGGCGGCgaGCGCGCCCgcGGGCc -3'
miRNA:   3'- aCuaGGCCGCCGagUGCGCGGG--CCUG- -5'
23761 5' -62.7 NC_005261.1 + 2682 0.67 0.537091
Target:  5'- gGAcCCGGCGGCgcgccggcuUUugGCcgGCgCCGGGCc -3'
miRNA:   3'- aCUaGGCCGCCG---------AGugCG--CG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 2947 0.66 0.565964
Target:  5'- ----gCGGCcgGGCUC-CG-GCCCGGACu -3'
miRNA:   3'- acuagGCCG--CCGAGuGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 2994 0.69 0.402809
Target:  5'- cGGcCUGGCGGCcCG-GCGCCgGGGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGUgCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 3411 0.66 0.575681
Target:  5'- ---gCCGGCgGGCUgAagaGCGCgCGGGCc -3'
miRNA:   3'- acuaGGCCG-CCGAgUg--CGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 3740 0.69 0.427149
Target:  5'- cGcgCCGGCGGCgCACcgcgccgccucuaGCGCCuCGcGGCa -3'
miRNA:   3'- aCuaGGCCGCCGaGUG-------------CGCGG-GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 3795 0.71 0.311949
Target:  5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3'
miRNA:   3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4080 0.7 0.340416
Target:  5'- cGA-CCGGCGGCagcggcgccgUCACGCuCCCGGu- -3'
miRNA:   3'- aCUaGGCCGCCG----------AGUGCGcGGGCCug -5'
23761 5' -62.7 NC_005261.1 + 4401 0.69 0.411103
Target:  5'- cGGg-CGGCGGCg-GCGCGCugCCGGGCc -3'
miRNA:   3'- aCUagGCCGCCGagUGCGCG--GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4579 0.73 0.237516
Target:  5'- gGGUCCGGCGGggCGCcccccgGCGCCaGGGCu -3'
miRNA:   3'- aCUAGGCCGCCgaGUG------CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4966 0.66 0.585436
Target:  5'- ---cCCGGCcgcGGCguccUCugGgGCCCGGAg -3'
miRNA:   3'- acuaGGCCG---CCG----AGugCgCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 5138 0.71 0.30512
Target:  5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3'
miRNA:   3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5'
23761 5' -62.7 NC_005261.1 + 5728 0.69 0.436607
Target:  5'- aGAggCCGGCGGgagaaGCGCGCgCGGAa -3'
miRNA:   3'- aCUa-GGCCGCCgag--UGCGCGgGCCUg -5'
23761 5' -62.7 NC_005261.1 + 6221 0.72 0.291809
Target:  5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3'
miRNA:   3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 6441 0.66 0.55629
Target:  5'- cGGUCCGGgGGCcggcCGgGCuGCCCGcACa -3'
miRNA:   3'- aCUAGGCCgCCGa---GUgCG-CGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 11043 0.68 0.490203
Target:  5'- ---cCCGGCGGCacUCggGCGcCGCCCaGGCg -3'
miRNA:   3'- acuaGGCCGCCG--AG--UGC-GCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 11923 0.69 0.436607
Target:  5'- cGG-CCGGCGGCUgcggcggccCGCGCcgcggcggcucGCCCGGcGCg -3'
miRNA:   3'- aCUaGGCCGCCGA---------GUGCG-----------CGGGCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.