miRNA display CGI


Results 21 - 40 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 12063 0.71 0.333126
Target:  5'- ---aCCGGCGGUgcggcagcggcgUC-CGCGCCgGGGCg -3'
miRNA:   3'- acuaGGCCGCCG------------AGuGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 12318 0.69 0.411103
Target:  5'- cGuagCCGGCGGg-CGCGCGCuuGGcCg -3'
miRNA:   3'- aCua-GGCCGCCgaGUGCGCGggCCuG- -5'
23761 5' -62.7 NC_005261.1 + 12705 0.75 0.174264
Target:  5'- uUGAagcCCGaGCGGCUCGgGCGCgCGGGCc -3'
miRNA:   3'- -ACUa--GGC-CGCCGAGUgCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 13044 0.66 0.614861
Target:  5'- aGggCgCGG-GGCcgCGCGCGCCCcugccGGGCg -3'
miRNA:   3'- aCuaG-GCCgCCGa-GUGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 14530 0.69 0.402809
Target:  5'- ---cCCGGCGGUggCGCGgcCGCCCGG-Cg -3'
miRNA:   3'- acuaGGCCGCCGa-GUGC--GCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 14817 0.67 0.546664
Target:  5'- -cGUCC-GCGGCUUauagAUGCGCCgGGAg -3'
miRNA:   3'- acUAGGcCGCCGAG----UGCGCGGgCCUg -5'
23761 5' -62.7 NC_005261.1 + 14978 0.67 0.508746
Target:  5'- cGA-CUGcGCGGCcgCGCcggccGCGCCCGGAg -3'
miRNA:   3'- aCUaGGC-CGCCGa-GUG-----CGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 15265 0.67 0.518128
Target:  5'- cGAUcgccCCGGCGGC--GC-CGCCgGGGCg -3'
miRNA:   3'- aCUA----GGCCGCCGagUGcGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 15367 0.66 0.605032
Target:  5'- ---cCCGGCGGCgcUCG-GCGCCCucGGCg -3'
miRNA:   3'- acuaGGCCGCCG--AGUgCGCGGGc-CUG- -5'
23761 5' -62.7 NC_005261.1 + 15475 0.67 0.527578
Target:  5'- cGAcCgCGGCGGa-CACGCGCCgcucgcugCGGGCg -3'
miRNA:   3'- aCUaG-GCCGCCgaGUGCGCGG--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 15865 0.66 0.614861
Target:  5'- aGGUCgCGGCaauGGCUCGagucgcCGaCGCgCGGGCg -3'
miRNA:   3'- aCUAG-GCCG---CCGAGU------GC-GCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 16104 0.68 0.445309
Target:  5'- ---aCCGGCGGCggccacgCACGCGaucaCCGcGGCc -3'
miRNA:   3'- acuaGGCCGCCGa------GUGCGCg---GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 16269 0.66 0.585436
Target:  5'- gGggCCGGgcuuCGGCUCGCccggggggGCGCCguCGGGCc -3'
miRNA:   3'- aCuaGGCC----GCCGAGUG--------CGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 17196 0.7 0.34782
Target:  5'- ----gCGGCGGCgagcaGCGCGCCCagcacGGACa -3'
miRNA:   3'- acuagGCCGCCGag---UGCGCGGG-----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 17329 0.7 0.378575
Target:  5'- cGGcCCGGCccaGCUCcCGCcccGCCCGGGCa -3'
miRNA:   3'- aCUaGGCCGc--CGAGuGCG---CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 19164 0.7 0.370718
Target:  5'- ---gCCGGCGGaUCACGCGaagcagcugCCGGGCg -3'
miRNA:   3'- acuaGGCCGCCgAGUGCGCg--------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 20857 0.73 0.232035
Target:  5'- ----gUGGCGGCUCuuGCGCCgCGGGCc -3'
miRNA:   3'- acuagGCCGCCGAGugCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 21676 0.74 0.201356
Target:  5'- gUGcUCCGGCuggGGCUCgaGCGCGUCgCGGGCg -3'
miRNA:   3'- -ACuAGGCCG---CCGAG--UGCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 21737 0.66 0.593262
Target:  5'- cGAUCgacacGCGGCUgcugcgccuggaGCGCGCgCCGGGCg -3'
miRNA:   3'- aCUAGgc---CGCCGAg-----------UGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 21818 0.73 0.25461
Target:  5'- cGggCCcGCGGCgggCGCGCGUgCGGGCg -3'
miRNA:   3'- aCuaGGcCGCCGa--GUGCGCGgGCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.