miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 22750 0.72 0.266558
Target:  5'- cGGggCGGCGGCggccCACGCGUCUGGGg -3'
miRNA:   3'- aCUagGCCGCCGa---GUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 23177 0.69 0.402809
Target:  5'- cGcgCCGGgGGCgacagcgaGCGCGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCgCCGag------UGCGCGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 23216 0.66 0.595221
Target:  5'- ----gCGGCGGC-CGCGCGCaaaagCCGGuGCa -3'
miRNA:   3'- acuagGCCGCCGaGUGCGCG-----GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 23476 0.68 0.462999
Target:  5'- ----gCGGCGGCgagugCGCGggccCGCCUGGGCa -3'
miRNA:   3'- acuagGCCGCCGa----GUGC----GCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 26110 0.67 0.508746
Target:  5'- aGAUCCaGCGGCcggguaagCAgGCGCgCGGuACg -3'
miRNA:   3'- aCUAGGcCGCCGa-------GUgCGCGgGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 26647 0.7 0.34782
Target:  5'- aGGUCCuGCcccugGGC-CACaCGCCCGGACg -3'
miRNA:   3'- aCUAGGcCG-----CCGaGUGcGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29393 0.72 0.260528
Target:  5'- aGAUCCgcgaGGCGGC-CGCGCGCUaCGcGGCg -3'
miRNA:   3'- aCUAGG----CCGCCGaGUGCGCGG-GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 29521 0.7 0.337486
Target:  5'- aUGGcCUGGCugcagagcgcgaaGCUCGCGgGCCCGGACc -3'
miRNA:   3'- -ACUaGGCCGc------------CGAGUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29806 0.75 0.182913
Target:  5'- gGcgCCGGCGGCgCGgGCGCCCGcGCc -3'
miRNA:   3'- aCuaGGCCGCCGaGUgCGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 29871 0.72 0.278956
Target:  5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3'
miRNA:   3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 30077 0.66 0.575681
Target:  5'- cGcgCUaGCGGCgcacccggagCGCGUGCuCCGGGCa -3'
miRNA:   3'- aCuaGGcCGCCGa---------GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 30266 0.75 0.165981
Target:  5'- cGG-CgCGGCGGCcCGCGCGCCCgccuGGACg -3'
miRNA:   3'- aCUaG-GCCGCCGaGUGCGCGGG----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 30339 0.66 0.563057
Target:  5'- cGG-CUGGCGGCcgcgcUCGCggcccugaaggccgGCGCgCCGGGCg -3'
miRNA:   3'- aCUaGGCCGCCG-----AGUG--------------CGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 31125 0.66 0.565964
Target:  5'- ----aCGGCGGCUuccgcCGCGUgccGCCCGGGg -3'
miRNA:   3'- acuagGCCGCCGA-----GUGCG---CGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 31342 0.68 0.462999
Target:  5'- cGcgCCGcuGCGGCggCGCGUGgCCUGGAUg -3'
miRNA:   3'- aCuaGGC--CGCCGa-GUGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 31871 0.67 0.546664
Target:  5'- gGGcCCGGCGcCuUCGCGCGCgCCGaGGCc -3'
miRNA:   3'- aCUaGGCCGCcG-AGUGCGCG-GGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 31966 0.77 0.136285
Target:  5'- ----aCGGUGGC-CACGCGCCUGGGCc -3'
miRNA:   3'- acuagGCCGCCGaGUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 32317 0.66 0.605032
Target:  5'- ---gCCGccGCGGC-CGCgGCGCCCGG-Cg -3'
miRNA:   3'- acuaGGC--CGCCGaGUG-CGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 32495 0.66 0.608962
Target:  5'- cGGcgaCGGCGGCaUCGgcgggggguccgcgcCGCGCCCGGcCc -3'
miRNA:   3'- aCUag-GCCGCCG-AGU---------------GCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 33512 0.66 0.605032
Target:  5'- aGGggCGGCGGCggcaccgCugGC-CCCGGGa -3'
miRNA:   3'- aCUagGCCGCCGa------GugCGcGGGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.