miRNA display CGI


Results 61 - 80 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 34367 0.67 0.518128
Target:  5'- gGcgCCGcGCGGCgcCGCGCGCagaCGcGGCg -3'
miRNA:   3'- aCuaGGC-CGCCGa-GUGCGCGg--GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 34935 0.68 0.462999
Target:  5'- cGGgg-GGCGGCcgGCGCGaCCCGGGCc -3'
miRNA:   3'- aCUaggCCGCCGagUGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 35147 0.66 0.605032
Target:  5'- ---cCCcGCGGCgcaagCACGCGCaugCGGACc -3'
miRNA:   3'- acuaGGcCGCCGa----GUGCGCGg--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 35456 0.71 0.325952
Target:  5'- gGGUCUagGcGCGGCgcgCGCGCGuCCCGGGg -3'
miRNA:   3'- aCUAGG--C-CGCCGa--GUGCGC-GGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 35705 0.66 0.595221
Target:  5'- gUGggCCGGgGGCUCGgugGCGgcCCCGGcCg -3'
miRNA:   3'- -ACuaGGCCgCCGAGUg--CGC--GGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 36803 0.66 0.595221
Target:  5'- uUGcgCCGGcCGGCgcUACGUGCcCCGGuauGCg -3'
miRNA:   3'- -ACuaGGCC-GCCGa-GUGCGCG-GGCC---UG- -5'
23761 5' -62.7 NC_005261.1 + 37353 0.66 0.575681
Target:  5'- -uAUCCgcgGGCGGUgcUCGC-CGCCCGaGGCg -3'
miRNA:   3'- acUAGG---CCGCCG--AGUGcGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 38655 0.67 0.518128
Target:  5'- gUGAaagCGGCGGgU-GCGgGCCCGGGCc -3'
miRNA:   3'- -ACUag-GCCGCCgAgUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 38911 0.7 0.386544
Target:  5'- --cUCCGGCGcGCgggccCGCGCGCcaagccggcggCCGGGCg -3'
miRNA:   3'- acuAGGCCGC-CGa----GUGCGCG-----------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 41155 0.66 0.565964
Target:  5'- ---gCCGGUaGGCUucgucCACGCgGCCCGGGu -3'
miRNA:   3'- acuaGGCCG-CCGA-----GUGCG-CGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 43432 0.72 0.272701
Target:  5'- ---gCCGGCggggagcuGGCUCG-GCGCCUGGACg -3'
miRNA:   3'- acuaGGCCG--------CCGAGUgCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 44362 0.74 0.196599
Target:  5'- -uAUCCG--GGCUCAUGgGCCCGGACg -3'
miRNA:   3'- acUAGGCcgCCGAGUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 44707 0.66 0.595221
Target:  5'- cGAUCUucaCGGCUgACGCGCgCaGGGCg -3'
miRNA:   3'- aCUAGGcc-GCCGAgUGCGCGgG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 44954 0.66 0.614861
Target:  5'- gGAgagCCugcuGCGGgaCGCGCgcgaggGCCCGGGCg -3'
miRNA:   3'- aCUa--GGc---CGCCgaGUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 45615 0.67 0.499436
Target:  5'- ---aCCGGCGGCgcggCGCgGCGCggCGGGCc -3'
miRNA:   3'- acuaGGCCGCCGa---GUG-CGCGg-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 47706 0.66 0.564995
Target:  5'- cGcgUCGGCGGCgUCGgGgGCCuccucggCGGACa -3'
miRNA:   3'- aCuaGGCCGCCG-AGUgCgCGG-------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 48303 0.67 0.546664
Target:  5'- cGAggccUCgGGgGGCgCGuCGgGCCCGGGCu -3'
miRNA:   3'- aCU----AGgCCgCCGaGU-GCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 49068 0.7 0.386544
Target:  5'- aGGUUCGcgaaGCGGg-CACGCGCCgCGGGCc -3'
miRNA:   3'- aCUAGGC----CGCCgaGUGCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 50552 0.66 0.565964
Target:  5'- ---aUCGGCGcGCggaccacggUCACGCGCCUGG-Cg -3'
miRNA:   3'- acuaGGCCGC-CG---------AGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 50820 0.68 0.462999
Target:  5'- gGGcUCCGcGCGGCUuggcgccgcgagCugGCGCCUGuGGCu -3'
miRNA:   3'- aCU-AGGC-CGCCGA------------GugCGCGGGC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.