miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 51185 0.69 0.402809
Target:  5'- cGcgCUGGCGacGCUCgccACGCcCCCGGGCg -3'
miRNA:   3'- aCuaGGCCGC--CGAG---UGCGcGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 51876 0.71 0.311949
Target:  5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3'
miRNA:   3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 53008 0.67 0.498509
Target:  5'- gGcgUCGGCGcaGCUCGCcagcgcuuccgcgGCGCCgGGGCa -3'
miRNA:   3'- aCuaGGCCGC--CGAGUG-------------CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 53234 0.68 0.462999
Target:  5'- gGAUgCGGCGccaGCUCgccccGCGCGuCCCGGuCg -3'
miRNA:   3'- aCUAgGCCGC---CGAG-----UGCGC-GGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 53498 0.66 0.614861
Target:  5'- cGcgCCaGgGGCUCGuuauCGCGCCCGaaGGCu -3'
miRNA:   3'- aCuaGGcCgCCGAGU----GCGCGGGC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 54232 0.66 0.555325
Target:  5'- aGGUCacgCGGCGcgcGCUCaugugcaGCGCGCCCuGGCg -3'
miRNA:   3'- aCUAG---GCCGC---CGAG-------UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 54366 0.72 0.291809
Target:  5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 55173 0.68 0.445309
Target:  5'- ---gCCGGCGGCUCGCGgGgC-GGAUc -3'
miRNA:   3'- acuaGGCCGCCGAGUGCgCgGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55213 0.7 0.362972
Target:  5'- gGAUCCGGCGGCcCGagGCGgCgaGGGCg -3'
miRNA:   3'- aCUAGGCCGCCGaGUg-CGCgGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 55680 0.67 0.527578
Target:  5'- cGAUUuucggccagcaCGGCGGC-CACGgcCGCuuGGGCg -3'
miRNA:   3'- aCUAG-----------GCCGCCGaGUGC--GCGggCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55745 0.66 0.585436
Target:  5'- gUGcugCCGGaCGGCcucgacgCGCGCcgccGCCCGGAUc -3'
miRNA:   3'- -ACua-GGCC-GCCGa------GUGCG----CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 57410 0.66 0.614861
Target:  5'- gUGAUCCgcGGcCGGCgcCGCGaGCCCaGGAUg -3'
miRNA:   3'- -ACUAGG--CC-GCCGa-GUGCgCGGG-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 59121 0.67 0.546664
Target:  5'- cGAgcuccCCGGCcaccgacucaGGCcgGCGCGcCCCGGGCg -3'
miRNA:   3'- aCUa----GGCCG----------CCGagUGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 59416 0.68 0.462999
Target:  5'- gGcgCCGGCGcugUCGCGCGgCCCGG-Ca -3'
miRNA:   3'- aCuaGGCCGCcg-AGUGCGC-GGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 59504 0.7 0.370718
Target:  5'- ----gCGGCGGCggucgcaCGCGCGCCCuGGAg -3'
miRNA:   3'- acuagGCCGCCGa------GUGCGCGGG-CCUg -5'
23761 5' -62.7 NC_005261.1 + 59682 0.69 0.411103
Target:  5'- cGAagCCGcccuCGGCcagCACGCGCuCCGGGCa -3'
miRNA:   3'- aCUa-GGCc---GCCGa--GUGCGCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 60258 0.66 0.55629
Target:  5'- gGGagCGGCGGCcgugaagAgGCGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-----UgCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 60835 0.74 0.215719
Target:  5'- aGAUCauCGGCGGCggcgaggUCGCGCGC-CGGGCc -3'
miRNA:   3'- aCUAG--GCCGCCG-------AGUGCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 63007 0.68 0.445309
Target:  5'- ---cUCGGCGGC-CGCGCccGCgCGGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCG--CGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 64179 0.7 0.378575
Target:  5'- gUGGUCCGGgcaGGCgaaaagCGCGUGCaCCGG-Cg -3'
miRNA:   3'- -ACUAGGCCg--CCGa-----GUGCGCG-GGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.