miRNA display CGI


Results 101 - 120 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 64876 0.66 0.585436
Target:  5'- aGAUCagCGGCGGCgggaGCGCCgGGuCc -3'
miRNA:   3'- aCUAG--GCCGCCGagugCGCGGgCCuG- -5'
23761 5' -62.7 NC_005261.1 + 65801 0.67 0.537091
Target:  5'- -cAUCC-GCGGgUCgGgGUGCCCGGGCg -3'
miRNA:   3'- acUAGGcCGCCgAG-UgCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 66036 0.66 0.55629
Target:  5'- cGuagUCGGCGGC-CACGgccaGcCCCGGGCc -3'
miRNA:   3'- aCua-GGCCGCCGaGUGCg---C-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 66344 0.66 0.611911
Target:  5'- aGGUCUGcgaucuuggccagcGCGaGCUCGCGC-CCCGG-Cg -3'
miRNA:   3'- aCUAGGC--------------CGC-CGAGUGCGcGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 68148 0.68 0.445309
Target:  5'- cGcgCCguGGcCGGCUaCACGCGCgCGGAg -3'
miRNA:   3'- aCuaGG--CC-GCCGA-GUGCGCGgGCCUg -5'
23761 5' -62.7 NC_005261.1 + 68531 0.67 0.546664
Target:  5'- gGcgCCGcCGGCgccCGCGCGCCCccugcugcgcGGGCu -3'
miRNA:   3'- aCuaGGCcGCCGa--GUGCGCGGG----------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 68736 0.66 0.565964
Target:  5'- gGcgCCGGCGGgaagaagCGCcCGCCgGGGCg -3'
miRNA:   3'- aCuaGGCCGCCga-----GUGcGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 70528 0.7 0.386544
Target:  5'- cGAUCgccaCGGCGGCgCcCGCGCCCcacccgccgcaGGGCg -3'
miRNA:   3'- aCUAG----GCCGCCGaGuGCGCGGG-----------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 70814 0.72 0.278956
Target:  5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3'
miRNA:   3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 71070 0.66 0.614861
Target:  5'- ---gCCGcGCGGCggGCgggGCGUCCGGGCc -3'
miRNA:   3'- acuaGGC-CGCCGagUG---CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71158 0.76 0.150468
Target:  5'- ---cCCGGCaGGCUCugggaugaACGCGUCCGGGCg -3'
miRNA:   3'- acuaGGCCG-CCGAG--------UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71404 0.66 0.575681
Target:  5'- gUGGUa-GGCGGCgUCcgGCGCggggcccgGCCCGGGCc -3'
miRNA:   3'- -ACUAggCCGCCG-AG--UGCG--------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71595 0.71 0.318193
Target:  5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3'
miRNA:   3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 72526 0.68 0.445309
Target:  5'- --cUCCuuGGCGGCUCGCuGCGCggcaggggaCGGGCg -3'
miRNA:   3'- acuAGG--CCGCCGAGUG-CGCGg--------GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 72774 0.74 0.221393
Target:  5'- ----aCGGCGGCcgcgCACGCGUCCGGGg -3'
miRNA:   3'- acuagGCCGCCGa---GUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 72950 0.69 0.394622
Target:  5'- gGcgCCGGCaccGGCUCGCGCccgccGCCgCGGGg -3'
miRNA:   3'- aCuaGGCCG---CCGAGUGCG-----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 73133 0.67 0.499436
Target:  5'- cGGUCCccgGGCcgGGCUCGCGCcGCCa-GGCg -3'
miRNA:   3'- aCUAGG---CCG--CCGAGUGCG-CGGgcCUG- -5'
23761 5' -62.7 NC_005261.1 + 73942 0.7 0.355339
Target:  5'- cUGcUCCGGCuugcagacGCgggGCGCGCCCGGGCc -3'
miRNA:   3'- -ACuAGGCCGc-------CGag-UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 74118 0.66 0.575681
Target:  5'- gGAcCCGGUGGUcCugGCGCCgGuGCu -3'
miRNA:   3'- aCUaGGCCGCCGaGugCGCGGgCcUG- -5'
23761 5' -62.7 NC_005261.1 + 74473 0.67 0.537091
Target:  5'- ---cCCGGC-GCg-GCGUGCCUGGGCg -3'
miRNA:   3'- acuaGGCCGcCGagUGCGCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.