miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 136607 0.68 0.490203
Target:  5'- aGcgUgGaGCGGCgcgCGCGCGCCgaGGGCg -3'
miRNA:   3'- aCuaGgC-CGCCGa--GUGCGCGGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 135077 0.74 0.221393
Target:  5'- --uUCCGGCGGCgggcUCGCG-GCCCGGcgGCg -3'
miRNA:   3'- acuAGGCCGCCG----AGUGCgCGGGCC--UG- -5'
23761 5' -62.7 NC_005261.1 + 132613 0.67 0.508746
Target:  5'- cGAgccgCCaGGgGGCgCugGCGCCgaGGACg -3'
miRNA:   3'- aCUa---GG-CCgCCGaGugCGCGGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 132366 0.69 0.436607
Target:  5'- ----gCGGCGcGCUCGcCGCGCUCGcGGCg -3'
miRNA:   3'- acuagGCCGC-CGAGU-GCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 131763 0.67 0.546664
Target:  5'- cGG-CCGGCgcGGCggGCGCGCCgcUGGGCc -3'
miRNA:   3'- aCUaGGCCG--CCGagUGCGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 130927 0.68 0.471981
Target:  5'- ---aCCGGCGGCUCuACGCcaacUCCGGcGCg -3'
miRNA:   3'- acuaGGCCGCCGAG-UGCGc---GGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 130464 0.69 0.394622
Target:  5'- cUGGcCCGaGCGGCUCgcgGCGUGCCUcGGCg -3'
miRNA:   3'- -ACUaGGC-CGCCGAG---UGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 129675 0.66 0.565964
Target:  5'- gGA-CCGGgGGCgu-CGCGaCUCGGGCc -3'
miRNA:   3'- aCUaGGCCgCCGaguGCGC-GGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 129577 0.72 0.278956
Target:  5'- gGAggaGGCGGC-CGCGCGCCgCgGGACa -3'
miRNA:   3'- aCUaggCCGCCGaGUGCGCGG-G-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 128558 0.67 0.518128
Target:  5'- cGAcucgCUGGC-GCUCugGgGCCCGGuuGCg -3'
miRNA:   3'- aCUa---GGCCGcCGAGugCgCGGGCC--UG- -5'
23761 5' -62.7 NC_005261.1 + 127887 0.68 0.490203
Target:  5'- cGcgCCGGC-GCcCGuCGgGCCCGGGCc -3'
miRNA:   3'- aCuaGGCCGcCGaGU-GCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 125272 0.66 0.586413
Target:  5'- -cGUCCGGgGGCcgcuggaagucaggcCGCGgGCgCCGGACc -3'
miRNA:   3'- acUAGGCCgCCGa--------------GUGCgCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 124256 0.71 0.318893
Target:  5'- gGcgCCGcGCGGCgccgccCGCGCGCCCcGGCc -3'
miRNA:   3'- aCuaGGC-CGCCGa-----GUGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 122360 0.68 0.444435
Target:  5'- cGG-CC-GCGGCUCGCGCGgCCCcaccgcggccuggGGGCg -3'
miRNA:   3'- aCUaGGcCGCCGAGUGCGC-GGG-------------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 121080 0.66 0.575681
Target:  5'- gGcgCCGGCGGC-CGCcaGCGCCUccaGGcCg -3'
miRNA:   3'- aCuaGGCCGCCGaGUG--CGCGGG---CCuG- -5'
23761 5' -62.7 NC_005261.1 + 119653 0.76 0.154218
Target:  5'- ---aCCGGCGGC--GCGCGCCUGGAg -3'
miRNA:   3'- acuaGGCCGCCGagUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 119053 0.69 0.427149
Target:  5'- cGcgCCcGCGGC-CGCGCgugugcuuucgugGCCCGGGCc -3'
miRNA:   3'- aCuaGGcCGCCGaGUGCG-------------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 118917 0.7 0.386544
Target:  5'- gGGUCCGGCGccGCgggCGCgGCGCCgCGcGGCu -3'
miRNA:   3'- aCUAGGCCGC--CGa--GUG-CGCGG-GC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 118576 0.67 0.527578
Target:  5'- cGcgCgCGGCGGCgCGCGCcgccGCCgCGGAg -3'
miRNA:   3'- aCuaG-GCCGCCGaGUGCG----CGG-GCCUg -5'
23761 5' -62.7 NC_005261.1 + 118119 0.72 0.285326
Target:  5'- cUGcgCCGcCGGCUCGCGcCGCUCGGcCg -3'
miRNA:   3'- -ACuaGGCcGCCGAGUGC-GCGGGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.