miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 103105 0.68 0.445309
Target:  5'- ---cCCGGCcagcgcccccGGCgccaGCGCGCCCGGGu -3'
miRNA:   3'- acuaGGCCG----------CCGag--UGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 102994 0.66 0.614861
Target:  5'- cGAcaCGGCGGCcgcCACGCGCuCCGcguGGCu -3'
miRNA:   3'- aCUagGCCGCCGa--GUGCGCG-GGC---CUG- -5'
23761 5' -62.7 NC_005261.1 + 102949 0.7 0.34782
Target:  5'- cGcUgCGGCGGCggccgCGgGCGCCgCGGGCu -3'
miRNA:   3'- aCuAgGCCGCCGa----GUgCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 102537 0.66 0.565964
Target:  5'- uUGGccgCCuGCGGCccCAgGCGCCCGG-Cg -3'
miRNA:   3'- -ACUa--GGcCGCCGa-GUgCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 99213 0.67 0.496658
Target:  5'- aGGUCCGaggacaccGCGGCagGCGCGUcggcgucgcgcccgCCGGGCc -3'
miRNA:   3'- aCUAGGC--------CGCCGagUGCGCG--------------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 99016 0.68 0.445309
Target:  5'- cGAg-CGGCGGCgcggcggCGCGCGCCCa--- -3'
miRNA:   3'- aCUagGCCGCCGa------GUGCGCGGGccug -5'
23761 5' -62.7 NC_005261.1 + 98720 0.69 0.411103
Target:  5'- gGGUCCGGCcuugGGggCACGCGgCCgcgCGGGCg -3'
miRNA:   3'- aCUAGGCCG----CCgaGUGCGC-GG---GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98561 0.71 0.325952
Target:  5'- -aAUCCGGCGGgcggccgucCUcCGCGgGCUCGGGCg -3'
miRNA:   3'- acUAGGCCGCC---------GA-GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98533 0.73 0.226661
Target:  5'- aGAUCCGGcCGGUagGCuGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGCC-GCCGagUG-CGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 98472 0.68 0.462999
Target:  5'- cGA-CgGGCGGCcguccucCGCGgGCUCGGGCg -3'
miRNA:   3'- aCUaGgCCGCCGa------GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98265 0.66 0.564995
Target:  5'- -cGUCaGGCGGCgCGCGCguucgacGCCCGGcGCg -3'
miRNA:   3'- acUAGgCCGCCGaGUGCG-------CGGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 98042 0.67 0.508746
Target:  5'- cGGUaCUGGCGGCcgCGgGCGgCgGGACc -3'
miRNA:   3'- aCUA-GGCCGCCGa-GUgCGCgGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 97963 0.68 0.471981
Target:  5'- gGAggUGGCGGCggaGCgGUGCCCGGGg -3'
miRNA:   3'- aCUagGCCGCCGag-UG-CGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 97895 0.69 0.436607
Target:  5'- cGggCCGGCGGaccgUCugG-GCgCCGGGCg -3'
miRNA:   3'- aCuaGGCCGCCg---AGugCgCG-GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 97381 0.69 0.394622
Target:  5'- gUGucgCCGcGCGGCUUuCGCGCCugccgCGGGCu -3'
miRNA:   3'- -ACua-GGC-CGCCGAGuGCGCGG-----GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 97167 0.66 0.565964
Target:  5'- cGG-CCGGCuGGgUCGCGgGCgCCGGcCg -3'
miRNA:   3'- aCUaGGCCG-CCgAGUGCgCG-GGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 95808 0.67 0.537091
Target:  5'- gGcgCCGGCGGgggcucgcggucCUCGCgGCGCUugUGGGCg -3'
miRNA:   3'- aCuaGGCCGCC------------GAGUG-CGCGG--GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 94857 0.73 0.248802
Target:  5'- ---cUCGGC-GCUCGCGCacgGCCCGGGCg -3'
miRNA:   3'- acuaGGCCGcCGAGUGCG---CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 93755 0.71 0.325952
Target:  5'- ---cUCGGCGGCcCGCGCGCgCGcGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 93571 0.72 0.272701
Target:  5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3'
miRNA:   3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.