miRNA display CGI


Results 61 - 80 of 206 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 93472 0.7 0.362972
Target:  5'- cGGUgCCGG-GGCgCGCGuCGCCCGcGGCg -3'
miRNA:   3'- aCUA-GGCCgCCGaGUGC-GCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 93259 0.68 0.471981
Target:  5'- cGA-CCGGCGcGCcagCGCGCGCCUccaacaccggcaGGAUg -3'
miRNA:   3'- aCUaGGCCGC-CGa--GUGCGCGGG------------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 92800 0.71 0.325952
Target:  5'- gGGUCCGGUcGC-CGgGCGCgCGGGCg -3'
miRNA:   3'- aCUAGGCCGcCGaGUgCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 92322 0.66 0.575681
Target:  5'- cGGUCCGcGCGGCccaucCGCGgGCcaCCGGuCa -3'
miRNA:   3'- aCUAGGC-CGCCGa----GUGCgCG--GGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 90386 0.77 0.129663
Target:  5'- cGAggccccgCCGGCGGggCugGCGCCCGGcGCg -3'
miRNA:   3'- aCUa------GGCCGCCgaGugCGCGGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 89095 0.66 0.565964
Target:  5'- cGGcCCgGGCGcGCUgGCGCGCgCGuGGCa -3'
miRNA:   3'- aCUaGG-CCGC-CGAgUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 88822 0.71 0.311949
Target:  5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3'
miRNA:   3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 88034 0.66 0.575681
Target:  5'- cGGUgCCugggGGCGGUccagUCACGCGCCUGcGCc -3'
miRNA:   3'- aCUA-GG----CCGCCG----AGUGCGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 86975 0.72 0.272701
Target:  5'- -cGUCCGGCGGCagCACgGCGCCCucguGGCc -3'
miRNA:   3'- acUAGGCCGCCGa-GUG-CGCGGGc---CUG- -5'
23761 5' -62.7 NC_005261.1 + 86084 0.68 0.445309
Target:  5'- aUGAugcUCCGcGCGuuCUCGuCgGCGCCCGGGCg -3'
miRNA:   3'- -ACU---AGGC-CGCc-GAGU-G-CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 84656 0.68 0.454107
Target:  5'- ---cCCGGCuGGCgccgCcCGCGCCCGcGGCc -3'
miRNA:   3'- acuaGGCCG-CCGa---GuGCGCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 84303 0.67 0.530426
Target:  5'- ---cCCGGCGGCgccgaaggcguagguCGCGUCCGGGg -3'
miRNA:   3'- acuaGGCCGCCGagu------------GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 83749 0.66 0.602087
Target:  5'- cGAggUGGCGGCgcgccacggccgggUCGCaGCGCCCGaGCa -3'
miRNA:   3'- aCUagGCCGCCG--------------AGUG-CGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 83637 0.71 0.301079
Target:  5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3'
miRNA:   3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 83512 0.67 0.508746
Target:  5'- cGcgCCGGUGGaagcggCACGCGCCCu--- -3'
miRNA:   3'- aCuaGGCCGCCga----GUGCGCGGGccug -5'
23761 5' -62.7 NC_005261.1 + 82880 0.7 0.386544
Target:  5'- gGcgCUGGCGGUggccucgcCGCGCGCCgacgaGGACa -3'
miRNA:   3'- aCuaGGCCGCCGa-------GUGCGCGGg----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 81716 0.66 0.595221
Target:  5'- cGGUCCGcGCGcagcaGCggCACGCGUCCgcaguggaagacGGACg -3'
miRNA:   3'- aCUAGGC-CGC-----CGa-GUGCGCGGG------------CCUG- -5'
23761 5' -62.7 NC_005261.1 + 78558 0.71 0.325952
Target:  5'- cGAUCC----GCUCGCGCGCCgGGACc -3'
miRNA:   3'- aCUAGGccgcCGAGUGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 78048 0.68 0.445309
Target:  5'- ---gCCGGUGG-UCGCGgGCCCGGcCc -3'
miRNA:   3'- acuaGGCCGCCgAGUGCgCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 76460 0.74 0.191941
Target:  5'- cGGcgaCGGCGGCgccggCGCGCGCgCGGACc -3'
miRNA:   3'- aCUag-GCCGCCGa----GUGCGCGgGCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.