miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 21818 0.73 0.25461
Target:  5'- cGggCCcGCGGCgggCGCGCGUgCGGGCg -3'
miRNA:   3'- aCuaGGcCGCCGa--GUGCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 94857 0.73 0.248802
Target:  5'- ---cUCGGC-GCUCGCGCacgGCCCGGGCg -3'
miRNA:   3'- acuaGGCCGcCGAGUGCG---CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29806 0.75 0.182913
Target:  5'- gGcgCCGGCGGCgCGgGCGCCCGcGCc -3'
miRNA:   3'- aCuaGGCCGCCGaGUgCGCGGGCcUG- -5'
23761 5' -62.7 NC_005261.1 + 12705 0.75 0.174264
Target:  5'- uUGAagcCCGaGCGGCUCGgGCGCgCGGGCc -3'
miRNA:   3'- -ACUa--GGC-CGCCGAGUgCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 75578 0.75 0.170077
Target:  5'- cUGGg-CGGCGGCgcggcgcucgCGCGCGCCgCGGACg -3'
miRNA:   3'- -ACUagGCCGCCGa---------GUGCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 30266 0.75 0.165981
Target:  5'- cGG-CgCGGCGGCcCGCGCGCCCgccuGGACg -3'
miRNA:   3'- aCUaG-GCCGCCGaGUGCGCGGG----CCUG- -5'
23761 5' -62.7 NC_005261.1 + 119653 0.76 0.154218
Target:  5'- ---aCCGGCGGC--GCGCGCCUGGAg -3'
miRNA:   3'- acuaGGCCGCCGagUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 71158 0.76 0.150468
Target:  5'- ---cCCGGCaGGCUCugggaugaACGCGUCCGGGCg -3'
miRNA:   3'- acuaGGCCG-CCGAG--------UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 31966 0.77 0.136285
Target:  5'- ----aCGGUGGC-CACGCGCCUGGGCc -3'
miRNA:   3'- acuagGCCGCCGaGUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 90386 0.77 0.129663
Target:  5'- cGAggccccgCCGGCGGggCugGCGCCCGGcGCg -3'
miRNA:   3'- aCUa------GGCCGCCgaGugCGCGGGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 2391 0.75 0.187379
Target:  5'- cGcgCUGGCGGCgaGCGCGCCCgcGGGCc -3'
miRNA:   3'- aCuaGGCCGCCGagUGCGCGGG--CCUG- -5'
23761 5' -62.7 NC_005261.1 + 76460 0.74 0.191941
Target:  5'- cGGcgaCGGCGGCgccggCGCGCGCgCGGACc -3'
miRNA:   3'- aCUag-GCCGCCGa----GUGCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 4579 0.73 0.237516
Target:  5'- gGGUCCGGCGGggCGCcccccgGCGCCaGGGCu -3'
miRNA:   3'- aCUAGGCCGCCgaGUG------CGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 20857 0.73 0.232035
Target:  5'- ----gUGGCGGCUCuuGCGCCgCGGGCc -3'
miRNA:   3'- acuagGCCGCCGAGugCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 98533 0.73 0.226661
Target:  5'- aGAUCCGGcCGGUagGCuGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGCC-GCCGagUG-CGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 135077 0.74 0.221393
Target:  5'- --uUCCGGCGGCgggcUCGCG-GCCCGGcgGCg -3'
miRNA:   3'- acuAGGCCGCCG----AGUGCgCGGGCC--UG- -5'
23761 5' -62.7 NC_005261.1 + 72774 0.74 0.221393
Target:  5'- ----aCGGCGGCcgcgCACGCGUCCGGGg -3'
miRNA:   3'- acuagGCCGCCGa---GUGCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 60835 0.74 0.215719
Target:  5'- aGAUCauCGGCGGCggcgaggUCGCGCGC-CGGGCc -3'
miRNA:   3'- aCUAG--GCCGCCG-------AGUGCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 21676 0.74 0.201356
Target:  5'- gUGcUCCGGCuggGGCUCgaGCGCGUCgCGGGCg -3'
miRNA:   3'- -ACuAGGCCG---CCGAG--UGCGCGG-GCCUG- -5'
23761 5' -62.7 NC_005261.1 + 44362 0.74 0.196599
Target:  5'- -uAUCCG--GGCUCAUGgGCCCGGACg -3'
miRNA:   3'- acUAGGCcgCCGAGUGCgCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.