Results 41 - 60 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 5' | -62.7 | NC_005261.1 | + | 30266 | 0.75 | 0.165981 |
Target: 5'- cGG-CgCGGCGGCcCGCGCGCCCgccuGGACg -3' miRNA: 3'- aCUaG-GCCGCCGaGUGCGCGGG----CCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 119653 | 0.76 | 0.154218 |
Target: 5'- ---aCCGGCGGC--GCGCGCCUGGAg -3' miRNA: 3'- acuaGGCCGCCGagUGCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 71158 | 0.76 | 0.150468 |
Target: 5'- ---cCCGGCaGGCUCugggaugaACGCGUCCGGGCg -3' miRNA: 3'- acuaGGCCG-CCGAG--------UGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 31966 | 0.77 | 0.136285 |
Target: 5'- ----aCGGUGGC-CACGCGCCUGGGCc -3' miRNA: 3'- acuagGCCGCCGaGUGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 90386 | 0.77 | 0.129663 |
Target: 5'- cGAggccccgCCGGCGGggCugGCGCCCGGcGCg -3' miRNA: 3'- aCUa------GGCCGCCgaGugCGCGGGCC-UG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 72774 | 0.74 | 0.221393 |
Target: 5'- ----aCGGCGGCcgcgCACGCGUCCGGGg -3' miRNA: 3'- acuagGCCGCCGa---GUGCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 135077 | 0.74 | 0.221393 |
Target: 5'- --uUCCGGCGGCgggcUCGCG-GCCCGGcgGCg -3' miRNA: 3'- acuAGGCCGCCG----AGUGCgCGGGCC--UG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 70814 | 0.72 | 0.278956 |
Target: 5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3' miRNA: 3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29871 | 0.72 | 0.278956 |
Target: 5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3' miRNA: 3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 93571 | 0.72 | 0.272701 |
Target: 5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3' miRNA: 3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 86975 | 0.72 | 0.272701 |
Target: 5'- -cGUCCGGCGGCagCACgGCGCCCucguGGCc -3' miRNA: 3'- acUAGGCCGCCGa-GUG-CGCGGGc---CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 43432 | 0.72 | 0.272701 |
Target: 5'- ---gCCGGCggggagcuGGCUCG-GCGCCUGGACg -3' miRNA: 3'- acuaGGCCG--------CCGAGUgCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 22750 | 0.72 | 0.266558 |
Target: 5'- cGGggCGGCGGCggccCACGCGUCUGGGg -3' miRNA: 3'- aCUagGCCGCCGa---GUGCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 106543 | 0.72 | 0.260528 |
Target: 5'- ---cUCGGCGGCggcCGCGUCCGGGCc -3' miRNA: 3'- acuaGGCCGCCGaguGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29393 | 0.72 | 0.260528 |
Target: 5'- aGAUCCgcgaGGCGGC-CGCGCGCUaCGcGGCg -3' miRNA: 3'- aCUAGG----CCGCCGaGUGCGCGG-GC-CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 21818 | 0.73 | 0.25461 |
Target: 5'- cGggCCcGCGGCgggCGCGCGUgCGGGCg -3' miRNA: 3'- aCuaGGcCGCCGa--GUGCGCGgGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 94857 | 0.73 | 0.248802 |
Target: 5'- ---cUCGGC-GCUCGCGCacgGCCCGGGCg -3' miRNA: 3'- acuaGGCCGcCGAGUGCG---CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 4579 | 0.73 | 0.237516 |
Target: 5'- gGGUCCGGCGGggCGCcccccgGCGCCaGGGCu -3' miRNA: 3'- aCUAGGCCGCCgaGUG------CGCGGgCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 20857 | 0.73 | 0.232035 |
Target: 5'- ----gUGGCGGCUCuuGCGCCgCGGGCc -3' miRNA: 3'- acuagGCCGCCGAGugCGCGG-GCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 98533 | 0.73 | 0.226661 |
Target: 5'- aGAUCCGGcCGGUagGCuGCGCCCGcGAa -3' miRNA: 3'- aCUAGGCC-GCCGagUG-CGCGGGC-CUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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