Results 61 - 80 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 5' | -62.7 | NC_005261.1 | + | 94857 | 0.73 | 0.248802 |
Target: 5'- ---cUCGGC-GCUCGCGCacgGCCCGGGCg -3' miRNA: 3'- acuaGGCCGcCGAGUGCG---CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 21818 | 0.73 | 0.25461 |
Target: 5'- cGggCCcGCGGCgggCGCGCGUgCGGGCg -3' miRNA: 3'- aCuaGGcCGCCGa--GUGCGCGgGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 6221 | 0.72 | 0.291809 |
Target: 5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3' miRNA: 3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 54366 | 0.72 | 0.291809 |
Target: 5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3' miRNA: 3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 83637 | 0.71 | 0.301079 |
Target: 5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3' miRNA: 3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 5138 | 0.71 | 0.30512 |
Target: 5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3' miRNA: 3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 51876 | 0.71 | 0.311949 |
Target: 5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3' miRNA: 3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 88822 | 0.71 | 0.311949 |
Target: 5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3' miRNA: 3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 3795 | 0.71 | 0.311949 |
Target: 5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3' miRNA: 3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 71595 | 0.71 | 0.318193 |
Target: 5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3' miRNA: 3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 118119 | 0.72 | 0.285326 |
Target: 5'- cUGcgCCGcCGGCUCGCGcCGCUCGGcCg -3' miRNA: 3'- -ACuaGGCcGCCGAGUGC-GCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 129577 | 0.72 | 0.278956 |
Target: 5'- gGAggaGGCGGC-CGCGCGCCgCgGGACa -3' miRNA: 3'- aCUaggCCGCCGaGUGCGCGG-G-CCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29393 | 0.72 | 0.260528 |
Target: 5'- aGAUCCgcgaGGCGGC-CGCGCGCUaCGcGGCg -3' miRNA: 3'- aCUAGG----CCGCCGaGUGCGCGG-GC-CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 106543 | 0.72 | 0.260528 |
Target: 5'- ---cUCGGCGGCggcCGCGUCCGGGCc -3' miRNA: 3'- acuaGGCCGCCGaguGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 22750 | 0.72 | 0.266558 |
Target: 5'- cGGggCGGCGGCggccCACGCGUCUGGGg -3' miRNA: 3'- aCUagGCCGCCGa---GUGCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 43432 | 0.72 | 0.272701 |
Target: 5'- ---gCCGGCggggagcuGGCUCG-GCGCCUGGACg -3' miRNA: 3'- acuaGGCCG--------CCGAGUgCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 86975 | 0.72 | 0.272701 |
Target: 5'- -cGUCCGGCGGCagCACgGCGCCCucguGGCc -3' miRNA: 3'- acUAGGCCGCCGa-GUG-CGCGGGc---CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 93571 | 0.72 | 0.272701 |
Target: 5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3' miRNA: 3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29871 | 0.72 | 0.278956 |
Target: 5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3' miRNA: 3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 70814 | 0.72 | 0.278956 |
Target: 5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3' miRNA: 3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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