miRNA display CGI


Results 81 - 100 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 93755 0.71 0.325952
Target:  5'- ---cUCGGCGGCcCGCGCGCgCGcGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 98561 0.71 0.325952
Target:  5'- -aAUCCGGCGGgcggccgucCUcCGCGgGCUCGGGCg -3'
miRNA:   3'- acUAGGCCGCC---------GA-GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 104273 0.71 0.325952
Target:  5'- cGGUCuCGGCGGCUgCGCGgGCCuCGcaGGCc -3'
miRNA:   3'- aCUAG-GCCGCCGA-GUGCgCGG-GC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 78558 0.71 0.325952
Target:  5'- cGAUCC----GCUCGCGCGCCgGGACc -3'
miRNA:   3'- aCUAGGccgcCGAGUGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 108284 0.71 0.332404
Target:  5'- cUGGUCCGGCGuugcGCUCGCcugcacgGCGuCCCaGACg -3'
miRNA:   3'- -ACUAGGCCGC----CGAGUG-------CGC-GGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 12063 0.71 0.333126
Target:  5'- ---aCCGGCGGUgcggcagcggcgUC-CGCGCCgGGGCg -3'
miRNA:   3'- acuaGGCCGCCG------------AGuGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 29521 0.7 0.337486
Target:  5'- aUGGcCUGGCugcagagcgcgaaGCUCGCGgGCCCGGACc -3'
miRNA:   3'- -ACUaGGCCGc------------CGAGUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71595 0.71 0.318193
Target:  5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3'
miRNA:   3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 3795 0.71 0.311949
Target:  5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3'
miRNA:   3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 88822 0.71 0.311949
Target:  5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3'
miRNA:   3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 93571 0.72 0.272701
Target:  5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3'
miRNA:   3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 29871 0.72 0.278956
Target:  5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3'
miRNA:   3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 70814 0.72 0.278956
Target:  5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3'
miRNA:   3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5'
23761 5' -62.7 NC_005261.1 + 129577 0.72 0.278956
Target:  5'- gGAggaGGCGGC-CGCGCGCCgCgGGACa -3'
miRNA:   3'- aCUaggCCGCCGaGUGCGCGG-G-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 118119 0.72 0.285326
Target:  5'- cUGcgCCGcCGGCUCGCGcCGCUCGGcCg -3'
miRNA:   3'- -ACuaGGCcGCCGAGUGC-GCGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 6221 0.72 0.291809
Target:  5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3'
miRNA:   3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 54366 0.72 0.291809
Target:  5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 83637 0.71 0.301079
Target:  5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3'
miRNA:   3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 5138 0.71 0.30512
Target:  5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3'
miRNA:   3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5'
23761 5' -62.7 NC_005261.1 + 51876 0.71 0.311949
Target:  5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3'
miRNA:   3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.