miRNA display CGI


Results 101 - 120 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23761 5' -62.7 NC_005261.1 + 73942 0.7 0.355339
Target:  5'- cUGcUCCGGCuugcagacGCgggGCGCGCCCGGGCc -3'
miRNA:   3'- -ACuAGGCCGc-------CGag-UGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 55213 0.7 0.362972
Target:  5'- gGAUCCGGCGGCcCGagGCGgCgaGGGCg -3'
miRNA:   3'- aCUAGGCCGCCGaGUg-CGCgGg-CCUG- -5'
23761 5' -62.7 NC_005261.1 + 93472 0.7 0.362972
Target:  5'- cGGUgCCGG-GGCgCGCGuCGCCCGcGGCg -3'
miRNA:   3'- aCUA-GGCCgCCGaGUGC-GCGGGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 19164 0.7 0.370718
Target:  5'- ---gCCGGCGGaUCACGCGaagcagcugCCGGGCg -3'
miRNA:   3'- acuaGGCCGCCgAGUGCGCg--------GGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 113574 0.7 0.370718
Target:  5'- gUGGU-CGGUGGCcgccgCGCugggcgaccucGCGCCCGGGCa -3'
miRNA:   3'- -ACUAgGCCGCCGa----GUG-----------CGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 78558 0.71 0.325952
Target:  5'- cGAUCC----GCUCGCGCGCCgGGACc -3'
miRNA:   3'- aCUAGGccgcCGAGUGCGCGGgCCUG- -5'
23761 5' -62.7 NC_005261.1 + 104273 0.71 0.325952
Target:  5'- cGGUCuCGGCGGCUgCGCGgGCCuCGcaGGCc -3'
miRNA:   3'- aCUAG-GCCGCCGA-GUGCgCGG-GC--CUG- -5'
23761 5' -62.7 NC_005261.1 + 6221 0.72 0.291809
Target:  5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3'
miRNA:   3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 54366 0.72 0.291809
Target:  5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3'
miRNA:   3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5'
23761 5' -62.7 NC_005261.1 + 83637 0.71 0.301079
Target:  5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3'
miRNA:   3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 5138 0.71 0.30512
Target:  5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3'
miRNA:   3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5'
23761 5' -62.7 NC_005261.1 + 51876 0.71 0.311949
Target:  5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3'
miRNA:   3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 88822 0.71 0.311949
Target:  5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3'
miRNA:   3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5'
23761 5' -62.7 NC_005261.1 + 3795 0.71 0.311949
Target:  5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3'
miRNA:   3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 71595 0.71 0.318193
Target:  5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3'
miRNA:   3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 124256 0.71 0.318893
Target:  5'- gGcgCCGcGCGGCgccgccCGCGCGCCCcGGCc -3'
miRNA:   3'- aCuaGGC-CGCCGa-----GUGCGCGGGcCUG- -5'
23761 5' -62.7 NC_005261.1 + 35456 0.71 0.325952
Target:  5'- gGGUCUagGcGCGGCgcgCGCGCGuCCCGGGg -3'
miRNA:   3'- aCUAGG--C-CGCCGa--GUGCGC-GGGCCUg -5'
23761 5' -62.7 NC_005261.1 + 92800 0.71 0.325952
Target:  5'- gGGUCCGGUcGC-CGgGCGCgCGGGCg -3'
miRNA:   3'- aCUAGGCCGcCGaGUgCGCGgGCCUG- -5'
23761 5' -62.7 NC_005261.1 + 93755 0.71 0.325952
Target:  5'- ---cUCGGCGGCcCGCGCGCgCGcGGCg -3'
miRNA:   3'- acuaGGCCGCCGaGUGCGCGgGC-CUG- -5'
23761 5' -62.7 NC_005261.1 + 98561 0.71 0.325952
Target:  5'- -aAUCCGGCGGgcggccgucCUcCGCGgGCUCGGGCg -3'
miRNA:   3'- acUAGGCCGCC---------GA-GUGCgCGGGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.