Results 81 - 100 of 206 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23761 | 5' | -62.7 | NC_005261.1 | + | 93755 | 0.71 | 0.325952 |
Target: 5'- ---cUCGGCGGCcCGCGCGCgCGcGGCg -3' miRNA: 3'- acuaGGCCGCCGaGUGCGCGgGC-CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 98561 | 0.71 | 0.325952 |
Target: 5'- -aAUCCGGCGGgcggccgucCUcCGCGgGCUCGGGCg -3' miRNA: 3'- acUAGGCCGCC---------GA-GUGCgCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 104273 | 0.71 | 0.325952 |
Target: 5'- cGGUCuCGGCGGCUgCGCGgGCCuCGcaGGCc -3' miRNA: 3'- aCUAG-GCCGCCGA-GUGCgCGG-GC--CUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 78558 | 0.71 | 0.325952 |
Target: 5'- cGAUCC----GCUCGCGCGCCgGGACc -3' miRNA: 3'- aCUAGGccgcCGAGUGCGCGGgCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 108284 | 0.71 | 0.332404 |
Target: 5'- cUGGUCCGGCGuugcGCUCGCcugcacgGCGuCCCaGACg -3' miRNA: 3'- -ACUAGGCCGC----CGAGUG-------CGC-GGGcCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 12063 | 0.71 | 0.333126 |
Target: 5'- ---aCCGGCGGUgcggcagcggcgUC-CGCGCCgGGGCg -3' miRNA: 3'- acuaGGCCGCCG------------AGuGCGCGGgCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29521 | 0.7 | 0.337486 |
Target: 5'- aUGGcCUGGCugcagagcgcgaaGCUCGCGgGCCCGGACc -3' miRNA: 3'- -ACUaGGCCGc------------CGAGUGCgCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 71595 | 0.71 | 0.318193 |
Target: 5'- cGAUCaCGuaggcccgccgccGCGGCccgggCGCGgGCCCGGGCg -3' miRNA: 3'- aCUAG-GC-------------CGCCGa----GUGCgCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 3795 | 0.71 | 0.311949 |
Target: 5'- cGGUCCGccagcucgcgcaGCcGCUCGCGCgcugccgcggGCCCGGGCg -3' miRNA: 3'- aCUAGGC------------CGcCGAGUGCG----------CGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 88822 | 0.71 | 0.311949 |
Target: 5'- cGGggCGGCGGCgCGCGCcgGCCCGG-Cg -3' miRNA: 3'- aCUagGCCGCCGaGUGCG--CGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 93571 | 0.72 | 0.272701 |
Target: 5'- cGGUgCGGCGGgacgcgaUCGCGCGCUCGG-Cg -3' miRNA: 3'- aCUAgGCCGCCg------AGUGCGCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 29871 | 0.72 | 0.278956 |
Target: 5'- gGcgCCGGCGccGCUgcCGCcaGCGCCCGGGCc -3' miRNA: 3'- aCuaGGCCGC--CGA--GUG--CGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 70814 | 0.72 | 0.278956 |
Target: 5'- cGcgCCGGCGGCccCGgGCGCgCCGGcGCg -3' miRNA: 3'- aCuaGGCCGCCGa-GUgCGCG-GGCC-UG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 129577 | 0.72 | 0.278956 |
Target: 5'- gGAggaGGCGGC-CGCGCGCCgCgGGACa -3' miRNA: 3'- aCUaggCCGCCGaGUGCGCGG-G-CCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 118119 | 0.72 | 0.285326 |
Target: 5'- cUGcgCCGcCGGCUCGCGcCGCUCGGcCg -3' miRNA: 3'- -ACuaGGCcGCCGAGUGC-GCGGGCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 6221 | 0.72 | 0.291809 |
Target: 5'- aGAcCUGGCGGUcCAggUGCGCCCGGGg -3' miRNA: 3'- aCUaGGCCGCCGaGU--GCGCGGGCCUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 54366 | 0.72 | 0.291809 |
Target: 5'- aGGUCCGcgggcaGCGGCUCgGgGCGCCCGcGAa -3' miRNA: 3'- aCUAGGC------CGCCGAG-UgCGCGGGC-CUg -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 83637 | 0.71 | 0.301079 |
Target: 5'- aGGUCCagcgcguacgucagcGGCgugaGGCggaCGCGCGCCUGGGCg -3' miRNA: 3'- aCUAGG---------------CCG----CCGa--GUGCGCGGGCCUG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 5138 | 0.71 | 0.30512 |
Target: 5'- ---gCCGGC-GCUCGCGCGCCuCGGcCc -3' miRNA: 3'- acuaGGCCGcCGAGUGCGCGG-GCCuG- -5' |
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23761 | 5' | -62.7 | NC_005261.1 | + | 51876 | 0.71 | 0.311949 |
Target: 5'- gUGAgcgCCGcGCGGCagcagcggCGCGCuacaucGCCCGGGCg -3' miRNA: 3'- -ACUa--GGC-CGCCGa-------GUGCG------CGGGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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