miRNA display CGI


Results 1 - 20 of 396 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23762 3' -59.4 NC_005261.1 + 102314 0.66 0.810004
Target:  5'- gCGCGCCgCGGccgcggcgcgcagccGCGCCAgCU-CGGCc -3'
miRNA:   3'- gGCGCGGaGCC---------------UGCGGUgGAaGCUGc -5'
23762 3' -59.4 NC_005261.1 + 10891 0.66 0.806604
Target:  5'- cCCgGCGCCaacggCGGcggcggcaGCGCCGCCgccggccgCGACa -3'
miRNA:   3'- -GG-CGCGGa----GCC--------UGCGGUGGaa------GCUGc -5'
23762 3' -59.4 NC_005261.1 + 32664 0.66 0.806604
Target:  5'- cCCGCGCCgcuaACGCCGCCgccCGcCGc -3'
miRNA:   3'- -GGCGCGGagccUGCGGUGGaa-GCuGC- -5'
23762 3' -59.4 NC_005261.1 + 88510 0.66 0.806604
Target:  5'- cCCGCGCUUCGaGCGCUuCCacguguaCGACa -3'
miRNA:   3'- -GGCGCGGAGCcUGCGGuGGaa-----GCUGc -5'
23762 3' -59.4 NC_005261.1 + 130786 0.66 0.806604
Target:  5'- cCCGCGCUggccgcaccgCGGACGaCGCCcaauacgUCGAgGg -3'
miRNA:   3'- -GGCGCGGa---------GCCUGCgGUGGa------AGCUgC- -5'
23762 3' -59.4 NC_005261.1 + 3828 0.66 0.806604
Target:  5'- gCCGCggGCC-CGGGCGCUGgCggcagCGGCGc -3'
miRNA:   3'- -GGCG--CGGaGCCUGCGGUgGaa---GCUGC- -5'
23762 3' -59.4 NC_005261.1 + 6560 0.66 0.806604
Target:  5'- aCCGCcccuuGCCUCGuuUGCCugCagUUGGCGg -3'
miRNA:   3'- -GGCG-----CGGAGCcuGCGGugGa-AGCUGC- -5'
23762 3' -59.4 NC_005261.1 + 1502 0.66 0.806604
Target:  5'- gCCGCgGCCggcagcucgUCGGGCGCCAgCUccagCGcGCGc -3'
miRNA:   3'- -GGCG-CGG---------AGCCUGCGGUgGAa---GC-UGC- -5'
23762 3' -59.4 NC_005261.1 + 119990 0.66 0.806604
Target:  5'- gCCGaCGCUggaGGGCGCCGgCUacgCGGCc -3'
miRNA:   3'- -GGC-GCGGag-CCUGCGGUgGAa--GCUGc -5'
23762 3' -59.4 NC_005261.1 + 33922 0.66 0.801461
Target:  5'- gCCGCGUCUCuugugucgcccagcaGGaugGCGCCGCCUgUCGcUGg -3'
miRNA:   3'- -GGCGCGGAG---------------CC---UGCGGUGGA-AGCuGC- -5'
23762 3' -59.4 NC_005261.1 + 136624 0.66 0.801461
Target:  5'- gCGCGCCgaGGGCGgcgggaaggccugguCCGCCUggagcUCGAUGa -3'
miRNA:   3'- gGCGCGGagCCUGC---------------GGUGGA-----AGCUGC- -5'
23762 3' -59.4 NC_005261.1 + 116176 0.66 0.798003
Target:  5'- gCCGCGUCcCcGACGCCGCUg--GGCGc -3'
miRNA:   3'- -GGCGCGGaGcCUGCGGUGGaagCUGC- -5'
23762 3' -59.4 NC_005261.1 + 38537 0.66 0.798003
Target:  5'- gCGCGCCgggcacagcgcCGGcGCGCgGCCaugCGGCGg -3'
miRNA:   3'- gGCGCGGa----------GCC-UGCGgUGGaa-GCUGC- -5'
23762 3' -59.4 NC_005261.1 + 5510 0.66 0.798003
Target:  5'- gCCGCGgCagcggCGGcgaggcCGCCGgCUUCGGCGc -3'
miRNA:   3'- -GGCGCgGa----GCCu-----GCGGUgGAAGCUGC- -5'
23762 3' -59.4 NC_005261.1 + 105444 0.66 0.798003
Target:  5'- cUCGCGCCguacagcgCGGACacgGCCGCCcUCaGCu -3'
miRNA:   3'- -GGCGCGGa-------GCCUG---CGGUGGaAGcUGc -5'
23762 3' -59.4 NC_005261.1 + 101452 0.66 0.798003
Target:  5'- uCCaGCGCU--GGccccaGCGCCGCCggCGGCGg -3'
miRNA:   3'- -GG-CGCGGagCC-----UGCGGUGGaaGCUGC- -5'
23762 3' -59.4 NC_005261.1 + 111305 0.66 0.798003
Target:  5'- gCCGCuGCCUCcGcCGCCGCCgcgCGcuCGg -3'
miRNA:   3'- -GGCG-CGGAGcCuGCGGUGGaa-GCu-GC- -5'
23762 3' -59.4 NC_005261.1 + 16742 0.66 0.798003
Target:  5'- gCCGCGC---GGGCGCCGCCa-UGACc -3'
miRNA:   3'- -GGCGCGgagCCUGCGGUGGaaGCUGc -5'
23762 3' -59.4 NC_005261.1 + 22492 0.66 0.798003
Target:  5'- gCGCGCCcgCgGGGgGCCACg--CGGCGu -3'
miRNA:   3'- gGCGCGGa-G-CCUgCGGUGgaaGCUGC- -5'
23762 3' -59.4 NC_005261.1 + 77542 0.66 0.798003
Target:  5'- gCCGgGCUgguaCGG-CGCCGCCgccagUGGCGc -3'
miRNA:   3'- -GGCgCGGa---GCCuGCGGUGGaa---GCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.