miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23762 5' -58.7 NC_005261.1 + 44638 0.66 0.725055
Target:  5'- ----cGGAGGAGgaGCUCUGCgggGCGGUg -3'
miRNA:   3'- aaguaCUUCCUC--CGGGACGa--CGCCGu -5'
23762 5' -58.7 NC_005261.1 + 56394 0.66 0.725055
Target:  5'- cUCGcGggGGcccugGGcGCCCUGCgcuucGCGGCGc -3'
miRNA:   3'- aAGUaCuuCC-----UC-CGGGACGa----CGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 4435 0.66 0.694672
Target:  5'- -gCcgGAGGGcgucagcagcGGGCCCUccaGCgGCGGCGg -3'
miRNA:   3'- aaGuaCUUCC----------UCCGGGA---CGaCGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 20281 0.66 0.694672
Target:  5'- gUCGUGucgcGGGGGCgC-GCuUGCGGCAg -3'
miRNA:   3'- aAGUACuu--CCUCCGgGaCG-ACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 36575 0.66 0.684424
Target:  5'- ---cUGAGcGGGGGCCC-GCcGCGGCc -3'
miRNA:   3'- aaguACUU-CCUCCGGGaCGaCGCCGu -5'
23762 5' -58.7 NC_005261.1 + 104641 0.67 0.674131
Target:  5'- aUCccGGAGGAGGUgacgaacgcgCUggcgggcgugUGCUGCGGCAg -3'
miRNA:   3'- aAGuaCUUCCUCCG----------GG----------ACGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 105355 0.67 0.663803
Target:  5'- -cCGUGAGGcAGGCCgUGacagGCGGCGc -3'
miRNA:   3'- aaGUACUUCcUCCGGgACga--CGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 120633 0.67 0.663803
Target:  5'- ---cUGguGGcGGCCCUGUgccUGCGGCGc -3'
miRNA:   3'- aaguACuuCCuCCGGGACG---ACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 39382 0.67 0.643078
Target:  5'- -cCggGGAGGGcGGCCCUG--GCGGCGa -3'
miRNA:   3'- aaGuaCUUCCU-CCGGGACgaCGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 28856 0.67 0.643078
Target:  5'- gUCGUGGccGccGCCCUugagGCUGCGGCGc -3'
miRNA:   3'- aAGUACUucCucCGGGA----CGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 83046 0.67 0.632697
Target:  5'- cUCGccgcgGGAGGGGGCucCCUGCgcgcccccGCGGCGg -3'
miRNA:   3'- aAGUa----CUUCCUCCG--GGACGa-------CGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 23452 0.67 0.622316
Target:  5'- cUCAgggcaGAAGGcgccAGGCCC-GCgGCGGCGa -3'
miRNA:   3'- aAGUa----CUUCC----UCCGGGaCGaCGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 23002 0.68 0.570681
Target:  5'- ----aGAGGGGGGCCCggagGCGGCc -3'
miRNA:   3'- aaguaCUUCCUCCGGGacgaCGCCGu -5'
23762 5' -58.7 NC_005261.1 + 137925 0.68 0.56046
Target:  5'- -----cGAGcGGGCCCgGCUGCGGCGg -3'
miRNA:   3'- aaguacUUCcUCCGGGaCGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 242 0.68 0.56046
Target:  5'- -----cGAGcGGGCCCgGCUGCGGCGg -3'
miRNA:   3'- aaguacUUCcUCCGGGaCGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 19957 0.69 0.510242
Target:  5'- --gGUG-GGGcGGCCUcgGCUGCGGCAg -3'
miRNA:   3'- aagUACuUCCuCCGGGa-CGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 51135 0.69 0.509256
Target:  5'- aUCAUucGGcgcgaaagcccccGGGGCCCUGCgGCGGCGc -3'
miRNA:   3'- aAGUAcuUC-------------CUCCGGGACGaCGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 18682 0.7 0.490675
Target:  5'- ----cGAAGG-GGCCCcaggcUGUUGCGGCGc -3'
miRNA:   3'- aaguaCUUCCuCCGGG-----ACGACGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 129712 0.7 0.471464
Target:  5'- ----cGGAGGcAGGCCCgccgGCUgcaGCGGCAg -3'
miRNA:   3'- aaguaCUUCC-UCCGGGa---CGA---CGCCGU- -5'
23762 5' -58.7 NC_005261.1 + 10444 0.71 0.425196
Target:  5'- -gCGUGcuGGGAGGCgCUGCUGCaGCu -3'
miRNA:   3'- aaGUACu-UCCUCCGgGACGACGcCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.