miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 3' -64.6 NC_005261.1 + 93685 0.66 0.522047
Target:  5'- gCGCCgGCGG-GGcgCCGGCggGUGCCUc -3'
miRNA:   3'- -GCGG-UGCCaCCa-GGCCGagCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 126072 0.66 0.550026
Target:  5'- cCGCC-CGccGGcCuCGGCgggCGCGCCCa -3'
miRNA:   3'- -GCGGuGCcaCCaG-GCCGa--GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 111780 0.66 0.500975
Target:  5'- gCGCC-CGG-GGUgugccccuggacgcCUGGCUCGCGUCgGc -3'
miRNA:   3'- -GCGGuGCCaCCA--------------GGCCGAGCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 31425 0.66 0.522047
Target:  5'- uGCC-CGGggaGGcgCUGGCggCGCcGCCCGg -3'
miRNA:   3'- gCGGuGCCa--CCa-GGCCGa-GCG-CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 97697 0.66 0.503703
Target:  5'- uGCCgggGCGGUGGggagaCGGCggGUGgCCCGg -3'
miRNA:   3'- gCGG---UGCCACCag---GCCGagCGC-GGGC- -5'
23763 3' -64.6 NC_005261.1 + 131191 0.66 0.503703
Target:  5'- aCGcCCGCGGcgcGGUCgCcGCcggCGCGCCCGc -3'
miRNA:   3'- -GC-GGUGCCa--CCAG-GcCGa--GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 105426 0.66 0.522047
Target:  5'- uCGuCCA-GGUaGGUCUcGCUCGCGCCg- -3'
miRNA:   3'- -GC-GGUgCCA-CCAGGcCGAGCGCGGgc -5'
23763 3' -64.6 NC_005261.1 + 60395 0.66 0.503703
Target:  5'- gCGCCuccAUGGcgccgGG-CCGGCcCGgGCCCGg -3'
miRNA:   3'- -GCGG---UGCCa----CCaGGCCGaGCgCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 132361 0.66 0.512841
Target:  5'- cCGCCGCGGcGcGcucgCCGcGCUCGCGgcgcuguucCCCGa -3'
miRNA:   3'- -GCGGUGCCaC-Ca---GGC-CGAGCGC---------GGGC- -5'
23763 3' -64.6 NC_005261.1 + 115837 0.66 0.50735
Target:  5'- aGCUugGGcgcguUGGcCCGcGCggcccccgccgaggCGCGCCCGg -3'
miRNA:   3'- gCGGugCC-----ACCaGGC-CGa-------------GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 29516 0.66 0.512841
Target:  5'- aCGCCAUGGccUGG-CUGcagagcgcgaaGCUCGCggGCCCGg -3'
miRNA:   3'- -GCGGUGCC--ACCaGGC-----------CGAGCG--CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 120359 0.66 0.503703
Target:  5'- gCGCUggACGGUGcGcgaCGGCgcCGCGCCCu -3'
miRNA:   3'- -GCGG--UGCCAC-Cag-GCCGa-GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 78340 0.66 0.503703
Target:  5'- gCGCCaacGCGGUaccUCgGGCgccaCGCGCCCGc -3'
miRNA:   3'- -GCGG---UGCCAcc-AGgCCGa---GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 59388 0.66 0.500067
Target:  5'- gCGCCACGGcgccgagcccgGGcucgCCGGCgccggcgcugucgCGCGgCCCGg -3'
miRNA:   3'- -GCGGUGCCa----------CCa---GGCCGa------------GCGC-GGGC- -5'
23763 3' -64.6 NC_005261.1 + 103996 0.66 0.503703
Target:  5'- cCGCCGCGGUcGG-CCaguauGGCgCGCGCgCUGu -3'
miRNA:   3'- -GCGGUGCCA-CCaGG-----CCGaGCGCG-GGC- -5'
23763 3' -64.6 NC_005261.1 + 58279 0.66 0.522047
Target:  5'- gCGCuCACGG-GG-CCGGC--GCGCCgGg -3'
miRNA:   3'- -GCG-GUGCCaCCaGGCCGagCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 20623 0.66 0.503703
Target:  5'- cCGCaucCGGgacugccGGcCCGGUUCGCcGCCCGc -3'
miRNA:   3'- -GCGgu-GCCa------CCaGGCCGAGCG-CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 58232 0.66 0.503703
Target:  5'- cCGCgGCGGcggGGUCCucGGCcaugcCGCGCCgCGc -3'
miRNA:   3'- -GCGgUGCCa--CCAGG--CCGa----GCGCGG-GC- -5'
23763 3' -64.6 NC_005261.1 + 32546 0.66 0.512841
Target:  5'- gGCCGCGGcgcgGG-CCGGCgCGCGUg-- -3'
miRNA:   3'- gCGGUGCCa---CCaGGCCGaGCGCGggc -5'
23763 3' -64.6 NC_005261.1 + 129890 0.66 0.50735
Target:  5'- cCGCCauGCGGaUGGcCUGGUccaccaugcuguccgUCGUGCCCu -3'
miRNA:   3'- -GCGG--UGCC-ACCaGGCCG---------------AGCGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.