miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 3' -64.6 NC_005261.1 + 73 0.71 0.285789
Target:  5'- gCGCgCGCGGgggcggGGUgCGGggCGCGCCCc -3'
miRNA:   3'- -GCG-GUGCCa-----CCAgGCCgaGCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 1408 0.67 0.485644
Target:  5'- gGCCGCGGcGG--CGGCgggggCgGCGCCCGc -3'
miRNA:   3'- gCGGUGCCaCCagGCCGa----G-CGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 1598 0.69 0.361677
Target:  5'- gCGgCGCGGUGG-CUGGC-CGCcucGCCCu -3'
miRNA:   3'- -GCgGUGCCACCaGGCCGaGCG---CGGGc -5'
23763 3' -64.6 NC_005261.1 + 2379 0.69 0.376897
Target:  5'- cCGCCGCaGcGGcgcgCUGGCggcgagCGCGCCCGc -3'
miRNA:   3'- -GCGGUGcCaCCa---GGCCGa-----GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 2478 0.67 0.445342
Target:  5'- gCGCCagggcucggggaagaGCgGGUGGUCCGcgaGC-CGCGCCgCGa -3'
miRNA:   3'- -GCGG---------------UG-CCACCAGGC---CGaGCGCGG-GC- -5'
23763 3' -64.6 NC_005261.1 + 2670 0.73 0.208077
Target:  5'- cCGCCGCGcUGGggacCCGGCggCGCGCCgGc -3'
miRNA:   3'- -GCGGUGCcACCa---GGCCGa-GCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 2942 0.72 0.233499
Target:  5'- cCGCCGCGGccgGGcUCCGGCccggacuaGgGCCCGg -3'
miRNA:   3'- -GCGGUGCCa--CC-AGGCCGag------CgCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 3484 0.71 0.285789
Target:  5'- gCGCCAgCGG-GGcCaCGGUUCGCGCCg- -3'
miRNA:   3'- -GCGGU-GCCaCCaG-GCCGAGCGCGGgc -5'
23763 3' -64.6 NC_005261.1 + 3827 0.66 0.550026
Target:  5'- uGCCGCGGgcccgggcgcUGGcggcagcggcgCCGGCgccgCGCGgCCGg -3'
miRNA:   3'- gCGGUGCC----------ACCa----------GGCCGa---GCGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 4570 0.76 0.125954
Target:  5'- -uCCGCGGgcgGGUCCGGCgggGCGCCCc -3'
miRNA:   3'- gcGGUGCCa--CCAGGCCGag-CGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 5122 0.67 0.485644
Target:  5'- uCGgCGCGGgcGGcccgCCGGCgcucgCGCGCCuCGg -3'
miRNA:   3'- -GCgGUGCCa-CCa---GGCCGa----GCGCGG-GC- -5'
23763 3' -64.6 NC_005261.1 + 5243 0.75 0.152945
Target:  5'- gGUCGaGcGUGG-CCGGCUCGUGCCCGc -3'
miRNA:   3'- gCGGUgC-CACCaGGCCGAGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 8501 0.67 0.494636
Target:  5'- gCGCCAgCGGgggGG-CCGGCcaaUCGCagcgagGCCCa -3'
miRNA:   3'- -GCGGU-GCCa--CCaGGCCG---AGCG------CGGGc -5'
23763 3' -64.6 NC_005261.1 + 11906 0.66 0.522047
Target:  5'- cCGCCGCGGgcccGGcCCGGC-CgGCGgCUGc -3'
miRNA:   3'- -GCGGUGCCa---CCaGGCCGaG-CGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 11945 0.72 0.228214
Target:  5'- gCGCCGCGGcGGcucgcCCGGCgCGCGCuCCa -3'
miRNA:   3'- -GCGGUGCCaCCa----GGCCGaGCGCG-GGc -5'
23763 3' -64.6 NC_005261.1 + 12300 0.72 0.238887
Target:  5'- cCGCCGCGGgcacGGgcgcguagCCGGCgggcgCGCGCuuGg -3'
miRNA:   3'- -GCGGUGCCa---CCa-------GGCCGa----GCGCGggC- -5'
23763 3' -64.6 NC_005261.1 + 12627 0.69 0.352752
Target:  5'- -aCCACGGUGuaGUCCGGCgcggucuggggcCGCGCCgGc -3'
miRNA:   3'- gcGGUGCCAC--CAGGCCGa-----------GCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 14528 0.66 0.550026
Target:  5'- aGCCcgGCGGUGG-CgCGGC---CGCCCGg -3'
miRNA:   3'- gCGG--UGCCACCaG-GCCGagcGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 14969 0.72 0.233499
Target:  5'- uGCCugGGgcgacugcgcGGccgcgCCGGC-CGCGCCCGg -3'
miRNA:   3'- gCGGugCCa---------CCa----GGCCGaGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 15064 0.68 0.408604
Target:  5'- uCGCgGCGGggucgggGGUCaGGCUCGCccucguCCCGg -3'
miRNA:   3'- -GCGgUGCCa------CCAGgCCGAGCGc-----GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.