miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 3' -64.6 NC_005261.1 + 85013 0.74 0.168327
Target:  5'- gGCCGCGG-GGUCgcgCGGCcgcCGCGCCCc -3'
miRNA:   3'- gCGGUGCCaCCAG---GCCGa--GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 126072 0.66 0.550026
Target:  5'- cCGCC-CGccGGcCuCGGCgggCGCGCCCa -3'
miRNA:   3'- -GCGGuGCcaCCaG-GCCGa--GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 14969 0.72 0.233499
Target:  5'- uGCCugGGgcgacugcgcGGccgcgCCGGC-CGCGCCCGg -3'
miRNA:   3'- gCGGugCCa---------CCa----GGCCGaGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 120936 0.72 0.228214
Target:  5'- gCGCCgggcGCGGgaaGGUggaGGCUCGCGCCCc -3'
miRNA:   3'- -GCGG----UGCCa--CCAgg-CCGAGCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 70642 0.72 0.228214
Target:  5'- gCGCCGCGGcgcugaGGUUCGGCgcCGCGgCCGc -3'
miRNA:   3'- -GCGGUGCCa-----CCAGGCCGa-GCGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 11945 0.72 0.228214
Target:  5'- gCGCCGCGGcGGcucgcCCGGCgCGCGCuCCa -3'
miRNA:   3'- -GCGGUGCCaCCa----GGCCGaGCGCG-GGc -5'
23763 3' -64.6 NC_005261.1 + 2670 0.73 0.208077
Target:  5'- cCGCCGCGcUGGggacCCGGCggCGCGCCgGc -3'
miRNA:   3'- -GCGGUGCcACCa---GGCCGa-GCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 118028 0.73 0.198595
Target:  5'- aCGCaCGCGG-GGcCCGGCcgCGaCGCCCGc -3'
miRNA:   3'- -GCG-GUGCCaCCaGGCCGa-GC-GCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 85952 0.73 0.198595
Target:  5'- gCGCCGCGGaagcuggcgUGGUCCGuGauugCGCGCUCGa -3'
miRNA:   3'- -GCGGUGCC---------ACCAGGC-Cga--GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 127806 0.74 0.180759
Target:  5'- gCGCCGCGGcGGcgggCC-GCUCGCGCUCGc -3'
miRNA:   3'- -GCGGUGCCaCCa---GGcCGAGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 106661 0.74 0.168327
Target:  5'- uCGCCggcGCGGUcGUCCaGCgCGCGCCCGa -3'
miRNA:   3'- -GCGG---UGCCAcCAGGcCGaGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 108276 0.77 0.111396
Target:  5'- -uCCACGGccUGGUCCGGCgUUGCGCUCGc -3'
miRNA:   3'- gcGGUGCC--ACCAGGCCG-AGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 43427 0.74 0.164356
Target:  5'- cCGCCGcCGGcgGGgagCUGGCUCGgCGCCUGg -3'
miRNA:   3'- -GCGGU-GCCa-CCa--GGCCGAGC-GCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 32505 0.75 0.16047
Target:  5'- gGCaucgGCGGggGGUCCGcGC-CGCGCCCGg -3'
miRNA:   3'- gCGg---UGCCa-CCAGGC-CGaGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 43796 0.75 0.156667
Target:  5'- gCGCCGCGGgugagGGggcgCCGGg-CGCGCCCu -3'
miRNA:   3'- -GCGGUGCCa----CCa---GGCCgaGCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 5243 0.75 0.152945
Target:  5'- gGUCGaGcGUGG-CCGGCUCGUGCCCGc -3'
miRNA:   3'- gCGGUgC-CACCaGGCCGAGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 72974 0.75 0.145742
Target:  5'- cCGCCGCGGgGGUCCgcgagcgcGGCcagCGCGUCCGc -3'
miRNA:   3'- -GCGGUGCCaCCAGG--------CCGa--GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 51926 0.76 0.138849
Target:  5'- gGCCGCGGccUGGUCCcGCUCGuCGCCgGc -3'
miRNA:   3'- gCGGUGCC--ACCAGGcCGAGC-GCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 4570 0.76 0.125954
Target:  5'- -uCCGCGGgcgGGUCCGGCgggGCGCCCc -3'
miRNA:   3'- gcGGUGCCa--CCAGGCCGag-CGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 72945 0.77 0.11702
Target:  5'- gCGCCgGCGccGGcaCCGGCUCGCGCCCGc -3'
miRNA:   3'- -GCGG-UGCcaCCa-GGCCGAGCGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.