miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23763 3' -64.6 NC_005261.1 + 103103 0.66 0.538774
Target:  5'- aGCC-CGGccagcgcccCCGGCgccagCGCGCCCGg -3'
miRNA:   3'- gCGGuGCCacca-----GGCCGa----GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 21781 0.66 0.536906
Target:  5'- cCGCCGCGGcgcGGgccgccgcagccgCCGGCcgggcCGgGCCCGc -3'
miRNA:   3'- -GCGGUGCCa--CCa------------GGCCGa----GCgCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 120250 0.66 0.531316
Target:  5'- uCGCCGCGGcUGccacgCCGGC-CGUcuaccGCCCGc -3'
miRNA:   3'- -GCGGUGCC-ACca---GGCCGaGCG-----CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 65213 0.66 0.531316
Target:  5'- gGCCAUGGgguaguucgGGUCCcgaaaGGCacCGCGCaCCGc -3'
miRNA:   3'- gCGGUGCCa--------CCAGG-----CCGa-GCGCG-GGC- -5'
23763 3' -64.6 NC_005261.1 + 107856 0.66 0.530386
Target:  5'- cCGCCGCccucgccGGccGcCCGcgcGCUCGCGCCCGc -3'
miRNA:   3'- -GCGGUG-------CCacCaGGC---CGAGCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 133837 0.66 0.529457
Target:  5'- gGCCGCGugcgcgccGUGG-CCGGCgcgcgcgacugcCGCGCCUa -3'
miRNA:   3'- gCGGUGC--------CACCaGGCCGa-----------GCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 57927 0.66 0.522047
Target:  5'- cCGCaCGCGcGUGcuGcCCGGCaccaGCGCCCGu -3'
miRNA:   3'- -GCG-GUGC-CAC--CaGGCCGag--CGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 105426 0.66 0.522047
Target:  5'- uCGuCCA-GGUaGGUCUcGCUCGCGCCg- -3'
miRNA:   3'- -GC-GGUgCCA-CCAGGcCGAGCGCGGgc -5'
23763 3' -64.6 NC_005261.1 + 110913 0.66 0.522047
Target:  5'- aCGCgACGGUGuUCCuGC-CGCGCUgGg -3'
miRNA:   3'- -GCGgUGCCACcAGGcCGaGCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 111670 0.66 0.522047
Target:  5'- gCGCCGCGGUGGcggcguacgUCGGCgaugUCGUGgaCCGc -3'
miRNA:   3'- -GCGGUGCCACCa--------GGCCG----AGCGCg-GGC- -5'
23763 3' -64.6 NC_005261.1 + 11906 0.66 0.522047
Target:  5'- cCGCCGCGGgcccGGcCCGGC-CgGCGgCUGc -3'
miRNA:   3'- -GCGGUGCCa---CCaGGCCGaG-CGCgGGC- -5'
23763 3' -64.6 NC_005261.1 + 93685 0.66 0.522047
Target:  5'- gCGCCgGCGG-GGcgCCGGCggGUGCCUc -3'
miRNA:   3'- -GCGG-UGCCaCCa-GGCCGagCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 58279 0.66 0.522047
Target:  5'- gCGCuCACGG-GG-CCGGC--GCGCCgGg -3'
miRNA:   3'- -GCG-GUGCCaCCaGGCCGagCGCGGgC- -5'
23763 3' -64.6 NC_005261.1 + 31425 0.66 0.522047
Target:  5'- uGCC-CGGggaGGcgCUGGCggCGCcGCCCGg -3'
miRNA:   3'- gCGGuGCCa--CCa-GGCCGa-GCG-CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 132361 0.66 0.512841
Target:  5'- cCGCCGCGGcGcGcucgCCGcGCUCGCGgcgcuguucCCCGa -3'
miRNA:   3'- -GCGGUGCCaC-Ca---GGC-CGAGCGC---------GGGC- -5'
23763 3' -64.6 NC_005261.1 + 32546 0.66 0.512841
Target:  5'- gGCCGCGGcgcgGG-CCGGCgCGCGUg-- -3'
miRNA:   3'- gCGGUGCCa---CCaGGCCGaGCGCGggc -5'
23763 3' -64.6 NC_005261.1 + 29516 0.66 0.512841
Target:  5'- aCGCCAUGGccUGG-CUGcagagcgcgaaGCUCGCggGCCCGg -3'
miRNA:   3'- -GCGGUGCC--ACCaGGC-----------CGAGCG--CGGGC- -5'
23763 3' -64.6 NC_005261.1 + 129890 0.66 0.50735
Target:  5'- cCGCCauGCGGaUGGcCUGGUccaccaugcuguccgUCGUGCCCu -3'
miRNA:   3'- -GCGG--UGCC-ACCaGGCCG---------------AGCGCGGGc -5'
23763 3' -64.6 NC_005261.1 + 115837 0.66 0.50735
Target:  5'- aGCUugGGcgcguUGGcCCGcGCggcccccgccgaggCGCGCCCGg -3'
miRNA:   3'- gCGGugCC-----ACCaGGC-CGa-------------GCGCGGGC- -5'
23763 3' -64.6 NC_005261.1 + 103996 0.66 0.503703
Target:  5'- cCGCCGCGGUcGG-CCaguauGGCgCGCGCgCUGu -3'
miRNA:   3'- -GCGGUGCCA-CCaGG-----CCGaGCGCG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.